Gene : Seita.3G164600 S. italica v2.2
Defline:  (1 of 1) PTHR23421:SF13 - BETA-GALACTOSIDASE Genomic Order:  1646
Name:  ? Seita.3G164600 Secondary Identifier:  ? PAC:32714007
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G164600 0.5kb upstream 0.5kb upstream 8722 true scaffold_3: 12009816-12018537 Setaria italica
Seita.3G164600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 12009816-12010315 Setaria italica
Seita.3G164600 0.5kb downstream 0.5kb downstream 8722 true scaffold_3: 12010316-12019037 Setaria italica
Seita.3G164600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 12018538-12019037 Setaria italica
Seita.3G164600 1.0kb upstream 1.0kb upstream 9222 true scaffold_3: 12009316-12018537 Setaria italica
Seita.3G164600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 12009316-12010315 Setaria italica
Seita.3G164600 1.0kb downstream 1.0kb downstream 9222 true scaffold_3: 12010316-12019537 Setaria italica
Seita.3G164600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 12018538-12019537 Setaria italica
Seita.3G164600 2.0kb upstream 2.0kb upstream 10222 true scaffold_3: 12008316-12018537 Setaria italica
Seita.3G164600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 12008316-12010315 Setaria italica
Seita.3G164600 2.0kb downstream 2.0kb downstream 10222 true scaffold_3: 12010316-12020537 Setaria italica
Seita.3G164600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 12018538-12020537 Setaria italica
Seita.3G164600 5.0kb upstream 5.0kb upstream 13222 true scaffold_3: 12005316-12018537 Setaria italica
Seita.3G164600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 12005316-12010315 Setaria italica
Seita.3G164600 5.0kb downstream 5.0kb downstream 13222 true scaffold_3: 12010316-12023537 Setaria italica
Seita.3G164600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 12018538-12023537 Setaria italica
Seita.3G164600 10.0kb upstream 10.0kb upstream 18222 true scaffold_3: 12000316-12018537 Setaria italica
Seita.3G164600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 12000316-12010315 Setaria italica
Seita.3G164600 10.0kb downstream 10.0kb downstream 18222 true scaffold_3: 12010316-12028537 Setaria italica
Seita.3G164600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 12018538-12028537 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177814 5267 Panicoideae View MSA
124576810 5269 Grass View MSA
122047626 5273 Angiosperm View MSA
121345456 5274 Embryophyte View MSA
123428653 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.449     High High
cufflinks 10.823        
cufflinks 11.042     High  
cufflinks 11.013     High  
cufflinks 8.259        
cufflinks 8.37        
cufflinks 11.513        
cufflinks 7.299        
cufflinks 6.973       Low
cufflinks 11.43        
cufflinks 12.372        
cufflinks 12.997        
cufflinks 12.417        
cufflinks 5.855       Low
cufflinks 9.608        
cufflinks 22.623     High High
cufflinks 9.541        
cufflinks 42.912     High High
cufflinks 8.555        
cufflinks 9.646        

0 Strain