Gene : Seita.3G168700 S. italica v2.2
Defline:  (1 of 2) KOG2444 - WD40 repeat protein Genomic Order:  1687
Name:  ? Seita.3G168700 Secondary Identifier:  ? PAC:32711608
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G168700 0.5kb upstream 0.5kb upstream 4585 true scaffold_3: 12422296-12426880 Setaria italica
Seita.3G168700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 12422296-12422795 Setaria italica
Seita.3G168700 0.5kb downstream 0.5kb downstream 4585 true scaffold_3: 12422796-12427380 Setaria italica
Seita.3G168700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 12426881-12427380 Setaria italica
Seita.3G168700 1.0kb upstream 1.0kb upstream 5085 true scaffold_3: 12421796-12426880 Setaria italica
Seita.3G168700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 12421796-12422795 Setaria italica
Seita.3G168700 1.0kb downstream 1.0kb downstream 5085 true scaffold_3: 12422796-12427880 Setaria italica
Seita.3G168700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 12426881-12427880 Setaria italica
Seita.3G168700 2.0kb upstream 2.0kb upstream 6085 true scaffold_3: 12420796-12426880 Setaria italica
Seita.3G168700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 12420796-12422795 Setaria italica
Seita.3G168700 2.0kb downstream 2.0kb downstream 6085 true scaffold_3: 12422796-12428880 Setaria italica
Seita.3G168700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 12426881-12428880 Setaria italica
Seita.3G168700 5.0kb upstream 5.0kb upstream 9085 true scaffold_3: 12417796-12426880 Setaria italica
Seita.3G168700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 12417796-12422795 Setaria italica
Seita.3G168700 5.0kb downstream 5.0kb downstream 9085 true scaffold_3: 12422796-12431880 Setaria italica
Seita.3G168700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 12426881-12431880 Setaria italica
Seita.3G168700 10.0kb upstream 10.0kb upstream 14085 true scaffold_3: 12412796-12426880 Setaria italica
Seita.3G168700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 12412796-12422795 Setaria italica
Seita.3G168700 10.0kb downstream 10.0kb downstream 14085 true scaffold_3: 12422796-12436880 Setaria italica
Seita.3G168700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 12426881-12436880 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026331 5273 Angiosperm View MSA
122175053 5267 Panicoideae View MSA
124574516 5269 Grass View MSA
121345084 5274 Embryophyte View MSA
123424015 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.078        
cufflinks 3.701        
cufflinks 2.555       Low
cufflinks 1.819       Low
cufflinks 2.254       Low
cufflinks 4.487       High
cufflinks 3.251        
cufflinks 3.267        
cufflinks 3.68        
cufflinks 2.917        
cufflinks 3.678        
cufflinks 3.751        
cufflinks 3.413        
cufflinks 3.748        
cufflinks 3.446        
cufflinks 4.377        
cufflinks 4.74       High
cufflinks 5.084       High
cufflinks 2.643       Low
cufflinks 3.361        

0 Strain