Gene : Seita.3G167000 S. italica v2.2
Defline:  (1 of 1) PTHR11262//PTHR11262:SF13 - HSL AND CLP PROTEASE Genomic Order:  1670
Name:  ? Seita.3G167000 Secondary Identifier:  ? PAC:32710465
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G167000 0.5kb upstream 0.5kb upstream 4285 true scaffold_3: 12275645-12279929 Setaria italica
Seita.3G167000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 12279430-12279929 Setaria italica
Seita.3G167000 0.5kb downstream 0.5kb downstream 4285 true scaffold_3: 12275145-12279429 Setaria italica
Seita.3G167000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 12275145-12275644 Setaria italica
Seita.3G167000 1.0kb upstream 1.0kb upstream 4785 true scaffold_3: 12275645-12280429 Setaria italica
Seita.3G167000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 12279430-12280429 Setaria italica
Seita.3G167000 1.0kb downstream 1.0kb downstream 4785 true scaffold_3: 12274645-12279429 Setaria italica
Seita.3G167000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 12274645-12275644 Setaria italica
Seita.3G167000 2.0kb upstream 2.0kb upstream 5785 true scaffold_3: 12275645-12281429 Setaria italica
Seita.3G167000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 12279430-12281429 Setaria italica
Seita.3G167000 2.0kb downstream 2.0kb downstream 5785 true scaffold_3: 12273645-12279429 Setaria italica
Seita.3G167000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 12273645-12275644 Setaria italica
Seita.3G167000 5.0kb upstream 5.0kb upstream 8785 true scaffold_3: 12275645-12284429 Setaria italica
Seita.3G167000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 12279430-12284429 Setaria italica
Seita.3G167000 5.0kb downstream 5.0kb downstream 8785 true scaffold_3: 12270645-12279429 Setaria italica
Seita.3G167000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 12270645-12275644 Setaria italica
Seita.3G167000 10.0kb upstream 10.0kb upstream 13785 true scaffold_3: 12275645-12289429 Setaria italica
Seita.3G167000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 12279430-12289429 Setaria italica
Seita.3G167000 10.0kb downstream 10.0kb downstream 13785 true scaffold_3: 12265645-12279429 Setaria italica
Seita.3G167000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 12265645-12275644 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121992824 5273 Angiosperm View MSA
122188561 5267 Panicoideae View MSA
124572317 5269 Grass View MSA
121348951 5274 Embryophyte View MSA
123427798 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.976        
cufflinks 2.457        
cufflinks 1.896        
cufflinks 1.91        
cufflinks 1.619       Low
cufflinks 2.332        
cufflinks 2.328        
cufflinks 2.467        
cufflinks 1.163       Low
cufflinks 4.635       High
cufflinks 2.729        
cufflinks 2.672        
cufflinks 2.465        
cufflinks 2.831        
cufflinks 3.547       High
cufflinks 3.626       High
cufflinks 3.649       High
cufflinks 2.843        
cufflinks 1.928        
cufflinks 2.855        

0 Strain