Gene : Seita.3G100900 S. italica v2.2
Defline:  (1 of 1) PTHR12817 - TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B Genomic Order:  1009
Name:  ? Seita.3G100900 Secondary Identifier:  ? PAC:32709909
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G100900 0.5kb upstream 0.5kb upstream 4233 true scaffold_3: 6604308-6608540 Setaria italica
Seita.3G100900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 6608041-6608540 Setaria italica
Seita.3G100900 0.5kb downstream 0.5kb downstream 4233 true scaffold_3: 6603808-6608040 Setaria italica
Seita.3G100900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 6603808-6604307 Setaria italica
Seita.3G100900 1.0kb upstream 1.0kb upstream 4733 true scaffold_3: 6604308-6609040 Setaria italica
Seita.3G100900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 6608041-6609040 Setaria italica
Seita.3G100900 1.0kb downstream 1.0kb downstream 4733 true scaffold_3: 6603308-6608040 Setaria italica
Seita.3G100900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 6603308-6604307 Setaria italica
Seita.3G100900 2.0kb upstream 2.0kb upstream 5733 true scaffold_3: 6604308-6610040 Setaria italica
Seita.3G100900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 6608041-6610040 Setaria italica
Seita.3G100900 2.0kb downstream 2.0kb downstream 5733 true scaffold_3: 6602308-6608040 Setaria italica
Seita.3G100900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 6602308-6604307 Setaria italica
Seita.3G100900 5.0kb upstream 5.0kb upstream 8733 true scaffold_3: 6604308-6613040 Setaria italica
Seita.3G100900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 6608041-6613040 Setaria italica
Seita.3G100900 5.0kb downstream 5.0kb downstream 8733 true scaffold_3: 6599308-6608040 Setaria italica
Seita.3G100900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 6599308-6604307 Setaria italica
Seita.3G100900 10.0kb upstream 10.0kb upstream 13733 true scaffold_3: 6604308-6618040 Setaria italica
Seita.3G100900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 6608041-6618040 Setaria italica
Seita.3G100900 10.0kb downstream 10.0kb downstream 13733 true scaffold_3: 6594308-6608040 Setaria italica
Seita.3G100900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 6594308-6604307 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194793 5267 Panicoideae View MSA
124569830 5269 Grass View MSA
122041714 5273 Angiosperm View MSA
123428891 5275 Viridiplantae View MSA
121346428 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.558        
cufflinks 5.88       High
cufflinks 2.107       Low
cufflinks 2.17        
cufflinks 2.476        
cufflinks 5.385        
cufflinks 2.907        
cufflinks 3.675        
cufflinks 3.257        
cufflinks 7.811       High
cufflinks 4.392        
cufflinks 4.257        
cufflinks 5.383        
cufflinks 3.16        
cufflinks 5.76        
cufflinks 1.49       Low
cufflinks 5.566        
cufflinks 1.263       Low
cufflinks 2.434        
cufflinks 5.81       High

0 Strain