Gene : Seita.3G108400 S. italica v2.2
Genomic Order:  1084 Name:  ? Seita.3G108400
Secondary Identifier:  ? PAC:32713788
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G108400 0.5kb upstream 0.5kb upstream 3624 true scaffold_3: 7205165-7208788 Setaria italica
Seita.3G108400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 7208289-7208788 Setaria italica
Seita.3G108400 0.5kb downstream 0.5kb downstream 3624 true scaffold_3: 7204665-7208288 Setaria italica
Seita.3G108400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 7204665-7205164 Setaria italica
Seita.3G108400 1.0kb upstream 1.0kb upstream 4124 true scaffold_3: 7205165-7209288 Setaria italica
Seita.3G108400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 7208289-7209288 Setaria italica
Seita.3G108400 1.0kb downstream 1.0kb downstream 4124 true scaffold_3: 7204165-7208288 Setaria italica
Seita.3G108400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 7204165-7205164 Setaria italica
Seita.3G108400 2.0kb upstream 2.0kb upstream 5124 true scaffold_3: 7205165-7210288 Setaria italica
Seita.3G108400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 7208289-7210288 Setaria italica
Seita.3G108400 2.0kb downstream 2.0kb downstream 5124 true scaffold_3: 7203165-7208288 Setaria italica
Seita.3G108400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 7203165-7205164 Setaria italica
Seita.3G108400 5.0kb upstream 5.0kb upstream 8124 true scaffold_3: 7205165-7213288 Setaria italica
Seita.3G108400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 7208289-7213288 Setaria italica
Seita.3G108400 5.0kb downstream 5.0kb downstream 8124 true scaffold_3: 7200165-7208288 Setaria italica
Seita.3G108400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 7200165-7205164 Setaria italica
Seita.3G108400 10.0kb upstream 10.0kb upstream 13124 true scaffold_3: 7205165-7218288 Setaria italica
Seita.3G108400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 7208289-7218288 Setaria italica
Seita.3G108400 10.0kb downstream 10.0kb downstream 13124 true scaffold_3: 7195165-7208288 Setaria italica
Seita.3G108400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 7195165-7205164 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121992600 5273 Angiosperm View MSA
122191292 5267 Panicoideae View MSA
124570230 5269 Grass View MSA
121262942 5274 Embryophyte View MSA
123301557 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.915       Low
cufflinks 9.066       High
cufflinks 7.531       High
cufflinks 6.926        
cufflinks 6.572        
cufflinks 7.855       High
cufflinks 4.98        
cufflinks 7.353        
cufflinks 5.833        
cufflinks 4.117       Low
cufflinks 4.449       Low
cufflinks 7.029        
cufflinks 6.455        
cufflinks 5.952        
cufflinks 6.423        
cufflinks 4.423       Low
cufflinks 5.408        
cufflinks 4.263       Low
cufflinks 6.161        
cufflinks 5.884        

0 Strain