Gene : Seita.3G112600 S. italica v2.2
Genomic Order:  1126 Name:  ? Seita.3G112600
Secondary Identifier:  ? PAC:32711844
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G112600 0.5kb upstream 0.5kb upstream 4371 true scaffold_3: 7566453-7570823 Setaria italica
Seita.3G112600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 7570324-7570823 Setaria italica
Seita.3G112600 0.5kb downstream 0.5kb downstream 4371 true scaffold_3: 7565953-7570323 Setaria italica
Seita.3G112600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 7565953-7566452 Setaria italica
Seita.3G112600 1.0kb upstream 1.0kb upstream 4871 true scaffold_3: 7566453-7571323 Setaria italica
Seita.3G112600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 7570324-7571323 Setaria italica
Seita.3G112600 1.0kb downstream 1.0kb downstream 4871 true scaffold_3: 7565453-7570323 Setaria italica
Seita.3G112600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 7565453-7566452 Setaria italica
Seita.3G112600 2.0kb upstream 2.0kb upstream 5871 true scaffold_3: 7566453-7572323 Setaria italica
Seita.3G112600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 7570324-7572323 Setaria italica
Seita.3G112600 2.0kb downstream 2.0kb downstream 5871 true scaffold_3: 7564453-7570323 Setaria italica
Seita.3G112600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 7564453-7566452 Setaria italica
Seita.3G112600 5.0kb upstream 5.0kb upstream 8871 true scaffold_3: 7566453-7575323 Setaria italica
Seita.3G112600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 7570324-7575323 Setaria italica
Seita.3G112600 5.0kb downstream 5.0kb downstream 8871 true scaffold_3: 7561453-7570323 Setaria italica
Seita.3G112600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 7561453-7566452 Setaria italica
Seita.3G112600 10.0kb upstream 10.0kb upstream 13871 true scaffold_3: 7566453-7580323 Setaria italica
Seita.3G112600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 7570324-7580323 Setaria italica
Seita.3G112600 10.0kb downstream 10.0kb downstream 13871 true scaffold_3: 7556453-7570323 Setaria italica
Seita.3G112600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 7556453-7566452 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188970 5267 Panicoideae View MSA
124575954 5269 Grass View MSA
122041581 5273 Angiosperm View MSA
121351725 5274 Embryophyte View MSA
123382293 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.571        
cufflinks 0.161       Low
cufflinks 0.206        
cufflinks 0.287        
cufflinks 0.473        
cufflinks 0.156       Low
cufflinks 0.458        
cufflinks 0.212        
cufflinks 0.378        
cufflinks 1.446        
cufflinks 1.281        
cufflinks 11.044       High
cufflinks 1.677        
cufflinks 0.6        
cufflinks 2.826       High
cufflinks 0.18       Low
cufflinks 2.346       High
cufflinks 1.595        
cufflinks 0.253        
cufflinks 3.134       High

0 Strain