Gene : Seita.3G115200 S. italica v2.2
Defline:  (1 of 2) PTHR22761//PTHR22761:SF17 - SNF7 - RELATED Genomic Order:  1152
Name:  ? Seita.3G115200 Secondary Identifier:  ? PAC:32710677
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G115200 0.5kb upstream 0.5kb upstream 3216 true scaffold_3: 7737296-7740511 Setaria italica
Seita.3G115200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 7740012-7740511 Setaria italica
Seita.3G115200 0.5kb downstream 0.5kb downstream 3216 true scaffold_3: 7736796-7740011 Setaria italica
Seita.3G115200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 7736796-7737295 Setaria italica
Seita.3G115200 1.0kb upstream 1.0kb upstream 3716 true scaffold_3: 7737296-7741011 Setaria italica
Seita.3G115200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 7740012-7741011 Setaria italica
Seita.3G115200 1.0kb downstream 1.0kb downstream 3716 true scaffold_3: 7736296-7740011 Setaria italica
Seita.3G115200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 7736296-7737295 Setaria italica
Seita.3G115200 2.0kb upstream 2.0kb upstream 4716 true scaffold_3: 7737296-7742011 Setaria italica
Seita.3G115200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 7740012-7742011 Setaria italica
Seita.3G115200 2.0kb downstream 2.0kb downstream 4716 true scaffold_3: 7735296-7740011 Setaria italica
Seita.3G115200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 7735296-7737295 Setaria italica
Seita.3G115200 5.0kb upstream 5.0kb upstream 7716 true scaffold_3: 7737296-7745011 Setaria italica
Seita.3G115200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 7740012-7745011 Setaria italica
Seita.3G115200 5.0kb downstream 5.0kb downstream 7716 true scaffold_3: 7732296-7740011 Setaria italica
Seita.3G115200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 7732296-7737295 Setaria italica
Seita.3G115200 10.0kb upstream 10.0kb upstream 12716 true scaffold_3: 7737296-7750011 Setaria italica
Seita.3G115200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 7740012-7750011 Setaria italica
Seita.3G115200 10.0kb downstream 10.0kb downstream 12716 true scaffold_3: 7727296-7740011 Setaria italica
Seita.3G115200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 7727296-7737295 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177140 5267 Panicoideae View MSA
124582350 5269 Grass View MSA
122046094 5273 Angiosperm View MSA
121350870 5274 Embryophyte View MSA
123426524 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.662     High  
cufflinks 12.876        
cufflinks 10.405       Low
cufflinks 11.991     High Low
cufflinks 12.359     High  
cufflinks 12.507        
cufflinks 17.797     High  
cufflinks 11.241       Low
cufflinks 12.453        
cufflinks 19.732     High  
cufflinks 18.902     High  
cufflinks 31.517     High High
cufflinks 26.346     High High
cufflinks 17.308     High  
cufflinks 27.951     High High
cufflinks 12.393     High  
cufflinks 22.68     High  
cufflinks 22.076     High  
cufflinks 17.574     High  
cufflinks 23.009     High  

0 Strain