Gene : Seita.3G121200 S. italica v2.2
Genomic Order:  1212 Name:  ? Seita.3G121200
Secondary Identifier:  ? PAC:32713042
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G121200 0.5kb upstream 0.5kb upstream 3290 true scaffold_3: 8152885-8156174 Setaria italica
Seita.3G121200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 8155675-8156174 Setaria italica
Seita.3G121200 0.5kb downstream 0.5kb downstream 3290 true scaffold_3: 8152385-8155674 Setaria italica
Seita.3G121200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 8152385-8152884 Setaria italica
Seita.3G121200 1.0kb upstream 1.0kb upstream 3790 true scaffold_3: 8152885-8156674 Setaria italica
Seita.3G121200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 8155675-8156674 Setaria italica
Seita.3G121200 1.0kb downstream 1.0kb downstream 3790 true scaffold_3: 8151885-8155674 Setaria italica
Seita.3G121200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 8151885-8152884 Setaria italica
Seita.3G121200 2.0kb upstream 2.0kb upstream 4790 true scaffold_3: 8152885-8157674 Setaria italica
Seita.3G121200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 8155675-8157674 Setaria italica
Seita.3G121200 2.0kb downstream 2.0kb downstream 4790 true scaffold_3: 8150885-8155674 Setaria italica
Seita.3G121200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 8150885-8152884 Setaria italica
Seita.3G121200 5.0kb upstream 5.0kb upstream 7790 true scaffold_3: 8152885-8160674 Setaria italica
Seita.3G121200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 8155675-8160674 Setaria italica
Seita.3G121200 5.0kb downstream 5.0kb downstream 7790 true scaffold_3: 8147885-8155674 Setaria italica
Seita.3G121200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 8147885-8152884 Setaria italica
Seita.3G121200 10.0kb upstream 10.0kb upstream 12790 true scaffold_3: 8152885-8165674 Setaria italica
Seita.3G121200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 8155675-8165674 Setaria italica
Seita.3G121200 10.0kb downstream 10.0kb downstream 12790 true scaffold_3: 8142885-8155674 Setaria italica
Seita.3G121200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 8142885-8152884 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197351 5267 Panicoideae View MSA
124467355 5269 Grass View MSA
122041581 5273 Angiosperm View MSA
121351725 5274 Embryophyte View MSA
123382293 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.386       High
cufflinks 0.112     Low  
cufflinks 0.029     Low Low
cufflinks 0.044     Low  
cufflinks 0.117        
cufflinks 0.114     Low  
cufflinks 0.09     Low  
cufflinks 0.031     Low Low
cufflinks 0.289       High
cufflinks 0.186     Low  
cufflinks 0.218        
cufflinks 0.065     Low  
cufflinks 0.047     Low  
cufflinks 0.149        
cufflinks 0.132        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.035     Low  
cufflinks 0.006     Low Low
cufflinks 0.146        
cufflinks 0.174        

0 Strain