Gene : Seita.3G120200 S. italica v2.2
Defline:  (1 of 2) PTHR13018//PTHR13018:SF48 - PROBABLE MEMBRANE PROTEIN DUF221-RELATED Genomic Order:  1202
Name:  ? Seita.3G120200 Secondary Identifier:  ? PAC:32713813
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G120200 0.5kb upstream 0.5kb upstream 7110 true scaffold_3: 8073800-8080909 Setaria italica
Seita.3G120200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 8080410-8080909 Setaria italica
Seita.3G120200 0.5kb downstream 0.5kb downstream 7110 true scaffold_3: 8073300-8080409 Setaria italica
Seita.3G120200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 8073300-8073799 Setaria italica
Seita.3G120200 1.0kb upstream 1.0kb upstream 7610 true scaffold_3: 8073800-8081409 Setaria italica
Seita.3G120200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 8080410-8081409 Setaria italica
Seita.3G120200 1.0kb downstream 1.0kb downstream 7610 true scaffold_3: 8072800-8080409 Setaria italica
Seita.3G120200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 8072800-8073799 Setaria italica
Seita.3G120200 2.0kb upstream 2.0kb upstream 8610 true scaffold_3: 8073800-8082409 Setaria italica
Seita.3G120200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 8080410-8082409 Setaria italica
Seita.3G120200 2.0kb downstream 2.0kb downstream 8610 true scaffold_3: 8071800-8080409 Setaria italica
Seita.3G120200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 8071800-8073799 Setaria italica
Seita.3G120200 5.0kb upstream 5.0kb upstream 11610 true scaffold_3: 8073800-8085409 Setaria italica
Seita.3G120200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 8080410-8085409 Setaria italica
Seita.3G120200 5.0kb downstream 5.0kb downstream 11610 true scaffold_3: 8068800-8080409 Setaria italica
Seita.3G120200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 8068800-8073799 Setaria italica
Seita.3G120200 10.0kb upstream 10.0kb upstream 16610 true scaffold_3: 8073800-8090409 Setaria italica
Seita.3G120200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 8080410-8090409 Setaria italica
Seita.3G120200 10.0kb downstream 10.0kb downstream 16610 true scaffold_3: 8063800-8080409 Setaria italica
Seita.3G120200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 8063800-8073799 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181871 5267 Panicoideae View MSA
124574032 5269 Grass View MSA
122047982 5273 Angiosperm View MSA
123429118 5275 Viridiplantae View MSA
121350338 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.215       High
cufflinks 5.443        
cufflinks 3.165       Low
cufflinks 5.167       Low
cufflinks 5.078       Low
cufflinks 5.488        
cufflinks 6.426        
cufflinks 7.025        
cufflinks 8.878        
cufflinks 10.553        
cufflinks 16.171     High High
cufflinks 13.858     High High
cufflinks 15.8     High High
cufflinks 7.123        
cufflinks 10.877        
cufflinks 7.954        
cufflinks 8.607        
cufflinks 13.898     High High
cufflinks 8.286        
cufflinks 8.576        

0 Strain