Gene : Seita.3G130700 S. italica v2.2
Defline:  (1 of 1) PTHR31459:SF3 - DESICCATION-RELATED PROTEIN LEA14-RELATED Genomic Order:  1307
Name:  ? Seita.3G130700 Secondary Identifier:  ? PAC:32714611
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G130700 0.5kb upstream 0.5kb upstream 1412 true scaffold_3: 9055558-9056969 Setaria italica
Seita.3G130700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 9055558-9056057 Setaria italica
Seita.3G130700 0.5kb downstream 0.5kb downstream 1412 true scaffold_3: 9056058-9057469 Setaria italica
Seita.3G130700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 9056970-9057469 Setaria italica
Seita.3G130700 1.0kb upstream 1.0kb upstream 1912 true scaffold_3: 9055058-9056969 Setaria italica
Seita.3G130700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 9055058-9056057 Setaria italica
Seita.3G130700 1.0kb downstream 1.0kb downstream 1912 true scaffold_3: 9056058-9057969 Setaria italica
Seita.3G130700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 9056970-9057969 Setaria italica
Seita.3G130700 2.0kb upstream 2.0kb upstream 2912 true scaffold_3: 9054058-9056969 Setaria italica
Seita.3G130700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 9054058-9056057 Setaria italica
Seita.3G130700 2.0kb downstream 2.0kb downstream 2912 true scaffold_3: 9056058-9058969 Setaria italica
Seita.3G130700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 9056970-9058969 Setaria italica
Seita.3G130700 5.0kb upstream 5.0kb upstream 5912 true scaffold_3: 9051058-9056969 Setaria italica
Seita.3G130700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 9051058-9056057 Setaria italica
Seita.3G130700 5.0kb downstream 5.0kb downstream 5912 true scaffold_3: 9056058-9061969 Setaria italica
Seita.3G130700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 9056970-9061969 Setaria italica
Seita.3G130700 10.0kb upstream 10.0kb upstream 10912 true scaffold_3: 9046058-9056969 Setaria italica
Seita.3G130700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 9046058-9056057 Setaria italica
Seita.3G130700 10.0kb downstream 10.0kb downstream 10912 true scaffold_3: 9056058-9066969 Setaria italica
Seita.3G130700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 9056970-9066969 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179326 5267 Panicoideae View MSA
124575138 5269 Grass View MSA
122043658 5273 Angiosperm View MSA
121348077 5274 Embryophyte View MSA
123380721 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 144.662     High  
cufflinks 21.264     High Low
cufflinks 73.919     High  
cufflinks 96.587     High  
cufflinks 185.745     High High
cufflinks 18.594     High Low
cufflinks 99.082     High  
cufflinks 100.781     High  
cufflinks 251.091     High High
cufflinks 179.274     High High
cufflinks 128.424     High  
cufflinks 70.11     High  
cufflinks 68.336     High  
cufflinks 186.189     High High
cufflinks 109.259     High  
cufflinks 44.333     High Low
cufflinks 73.798     High  
cufflinks 42.557     High Low
cufflinks 111.573     High  
cufflinks 122.81     High  

0 Strain