Gene : Seita.3G232200 S. italica v2.2
Defline:  (1 of 3) PTHR10513 - DEOXYNUCLEOSIDE KINASE Genomic Order:  2322
Name:  ? Seita.3G232200 Secondary Identifier:  ? PAC:32711058
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7199 Setaria italica pathologic  
Sitalica PWY-7200 Setaria italica pathologic  
Sitalica PWY-7224 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G232200 0.5kb upstream 0.5kb upstream 4268 true scaffold_3: 19244011-19248278 Setaria italica
Seita.3G232200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 19247779-19248278 Setaria italica
Seita.3G232200 0.5kb downstream 0.5kb downstream 4268 true scaffold_3: 19243511-19247778 Setaria italica
Seita.3G232200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 19243511-19244010 Setaria italica
Seita.3G232200 1.0kb upstream 1.0kb upstream 4768 true scaffold_3: 19244011-19248778 Setaria italica
Seita.3G232200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 19247779-19248778 Setaria italica
Seita.3G232200 1.0kb downstream 1.0kb downstream 4768 true scaffold_3: 19243011-19247778 Setaria italica
Seita.3G232200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 19243011-19244010 Setaria italica
Seita.3G232200 2.0kb upstream 2.0kb upstream 5768 true scaffold_3: 19244011-19249778 Setaria italica
Seita.3G232200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 19247779-19249778 Setaria italica
Seita.3G232200 2.0kb downstream 2.0kb downstream 5768 true scaffold_3: 19242011-19247778 Setaria italica
Seita.3G232200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 19242011-19244010 Setaria italica
Seita.3G232200 5.0kb upstream 5.0kb upstream 8768 true scaffold_3: 19244011-19252778 Setaria italica
Seita.3G232200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 19247779-19252778 Setaria italica
Seita.3G232200 5.0kb downstream 5.0kb downstream 8768 true scaffold_3: 19239011-19247778 Setaria italica
Seita.3G232200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 19239011-19244010 Setaria italica
Seita.3G232200 10.0kb upstream 10.0kb upstream 13768 true scaffold_3: 19244011-19257778 Setaria italica
Seita.3G232200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 19247779-19257778 Setaria italica
Seita.3G232200 10.0kb downstream 10.0kb downstream 13768 true scaffold_3: 19234011-19247778 Setaria italica
Seita.3G232200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 19234011-19244010 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188232 5267 Panicoideae View MSA
124578778 5269 Grass View MSA
122044312 5273 Angiosperm View MSA
121349442 5274 Embryophyte View MSA
123425271 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.607     High High
cufflinks 14.209     High High
cufflinks 9.534        
cufflinks 6.539        
cufflinks 8.639        
cufflinks 14.013     High High
cufflinks 11.661        
cufflinks 8.924        
cufflinks 16.66     High High
cufflinks 7.611        
cufflinks 11.011        
cufflinks 7.067        
cufflinks 5.008       Low
cufflinks 9.87        
cufflinks 6.572        
cufflinks 12.171     High  
cufflinks 7.873        
cufflinks 20.049     High High
cufflinks 5.015       Low
cufflinks 6.077       Low

0 Strain