Gene : Seita.3G247900 S. italica v2.2
Defline:  (1 of 2) 2.7.9.1 - Pyruvate, phosphate dikinase / Pyruvate,phosphate dikinase Genomic Order:  2479
Name:  ? Seita.3G247900 Secondary Identifier:  ? PAC:32712620
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-241 Setaria italica pathologic  
Sitalica PWY-6549 Setaria italica pathologic  
Sitalica PWY-7115 Setaria italica pathologic  
Sitalica PWY-7117 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G247900 0.5kb upstream 0.5kb upstream 14949 true scaffold_3: 21258972-21273920 Setaria italica
Seita.3G247900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 21258972-21259471 Setaria italica
Seita.3G247900 0.5kb downstream 0.5kb downstream 14949 true scaffold_3: 21259472-21274420 Setaria italica
Seita.3G247900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 21273921-21274420 Setaria italica
Seita.3G247900 1.0kb upstream 1.0kb upstream 15449 true scaffold_3: 21258472-21273920 Setaria italica
Seita.3G247900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 21258472-21259471 Setaria italica
Seita.3G247900 1.0kb downstream 1.0kb downstream 15449 true scaffold_3: 21259472-21274920 Setaria italica
Seita.3G247900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 21273921-21274920 Setaria italica
Seita.3G247900 2.0kb upstream 2.0kb upstream 16449 true scaffold_3: 21257472-21273920 Setaria italica
Seita.3G247900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 21257472-21259471 Setaria italica
Seita.3G247900 2.0kb downstream 2.0kb downstream 16449 true scaffold_3: 21259472-21275920 Setaria italica
Seita.3G247900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 21273921-21275920 Setaria italica
Seita.3G247900 5.0kb upstream 5.0kb upstream 19449 true scaffold_3: 21254472-21273920 Setaria italica
Seita.3G247900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 21254472-21259471 Setaria italica
Seita.3G247900 5.0kb downstream 5.0kb downstream 19449 true scaffold_3: 21259472-21278920 Setaria italica
Seita.3G247900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 21273921-21278920 Setaria italica
Seita.3G247900 10.0kb upstream 10.0kb upstream 24449 true scaffold_3: 21249472-21273920 Setaria italica
Seita.3G247900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 21249472-21259471 Setaria italica
Seita.3G247900 10.0kb downstream 10.0kb downstream 24449 true scaffold_3: 21259472-21283920 Setaria italica
Seita.3G247900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 21273921-21283920 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191982 5267 Panicoideae View MSA
124580317 5269 Grass View MSA
122045986 5273 Angiosperm View MSA
121345134 5274 Embryophyte View MSA
123425418 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.911     High  
cufflinks 26.069     High  
cufflinks 1067.74     High High
cufflinks 1182.543     High High
cufflinks 1001.179     High High
cufflinks 21.236     High  
cufflinks 386.553     High  
cufflinks 275.438     High  
cufflinks 356.057     High  
cufflinks 9.617        
cufflinks 16.173     High  
cufflinks 20.83     High  
cufflinks 2.398       Low
cufflinks 377.537     High  
cufflinks 0.503       Low
cufflinks 779.239     High  
cufflinks 1.189       Low
cufflinks 184.679     High  
cufflinks 1040.422     High High
cufflinks 0.508       Low

0 Strain