Gene : Seita.3G249800 S. italica v2.2
Defline:  (1 of 1) 5.3.1.16 - 1-(5-phosphoribosyl)-5- ((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase / Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Genomic Order:  2498
Name:  ? Seita.3G249800 Secondary Identifier:  ? PAC:32711667
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica HISTSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G249800 0.5kb upstream 0.5kb upstream 5883 true scaffold_3: 21443149-21449031 Setaria italica
Seita.3G249800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 21448532-21449031 Setaria italica
Seita.3G249800 0.5kb downstream 0.5kb downstream 5883 true scaffold_3: 21442649-21448531 Setaria italica
Seita.3G249800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 21442649-21443148 Setaria italica
Seita.3G249800 1.0kb upstream 1.0kb upstream 6383 true scaffold_3: 21443149-21449531 Setaria italica
Seita.3G249800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 21448532-21449531 Setaria italica
Seita.3G249800 1.0kb downstream 1.0kb downstream 6383 true scaffold_3: 21442149-21448531 Setaria italica
Seita.3G249800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 21442149-21443148 Setaria italica
Seita.3G249800 2.0kb upstream 2.0kb upstream 7383 true scaffold_3: 21443149-21450531 Setaria italica
Seita.3G249800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 21448532-21450531 Setaria italica
Seita.3G249800 2.0kb downstream 2.0kb downstream 7383 true scaffold_3: 21441149-21448531 Setaria italica
Seita.3G249800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 21441149-21443148 Setaria italica
Seita.3G249800 5.0kb upstream 5.0kb upstream 10383 true scaffold_3: 21443149-21453531 Setaria italica
Seita.3G249800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 21448532-21453531 Setaria italica
Seita.3G249800 5.0kb downstream 5.0kb downstream 10383 true scaffold_3: 21438149-21448531 Setaria italica
Seita.3G249800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 21438149-21443148 Setaria italica
Seita.3G249800 10.0kb upstream 10.0kb upstream 15383 true scaffold_3: 21443149-21458531 Setaria italica
Seita.3G249800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 21448532-21458531 Setaria italica
Seita.3G249800 10.0kb downstream 10.0kb downstream 15383 true scaffold_3: 21433149-21448531 Setaria italica
Seita.3G249800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 21433149-21443148 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041281 5273 Angiosperm View MSA
122194677 5267 Panicoideae View MSA
124584289 5269 Grass View MSA
121347171 5274 Embryophyte View MSA
123424389 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.593        
cufflinks 1.858       High
cufflinks 0.67       Low
cufflinks 0.605       Low
cufflinks 0.886        
cufflinks 1.439        
cufflinks 1.267        
cufflinks 1.795       High
cufflinks 1.582        
cufflinks 1.299        
cufflinks 1.585        
cufflinks 1.512        
cufflinks 1.076        
cufflinks 0.994        
cufflinks 1.657        
cufflinks 1.142        
cufflinks 1.738       High
cufflinks 0.738       Low
cufflinks 0.656       Low
cufflinks 1.384        

0 Strain