Gene : Seita.3G254900 S. italica v2.2
Defline:  (1 of 1) PTHR12395 - DOM-3 RELATED Genomic Order:  2549
Name:  ? Seita.3G254900 Secondary Identifier:  ? PAC:32710535
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G254900 0.5kb upstream 0.5kb upstream 7373 true scaffold_3: 22071848-22079220 Setaria italica
Seita.3G254900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 22078721-22079220 Setaria italica
Seita.3G254900 0.5kb downstream 0.5kb downstream 7373 true scaffold_3: 22071348-22078720 Setaria italica
Seita.3G254900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 22071348-22071847 Setaria italica
Seita.3G254900 1.0kb upstream 1.0kb upstream 7873 true scaffold_3: 22071848-22079720 Setaria italica
Seita.3G254900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 22078721-22079720 Setaria italica
Seita.3G254900 1.0kb downstream 1.0kb downstream 7873 true scaffold_3: 22070848-22078720 Setaria italica
Seita.3G254900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 22070848-22071847 Setaria italica
Seita.3G254900 2.0kb upstream 2.0kb upstream 8873 true scaffold_3: 22071848-22080720 Setaria italica
Seita.3G254900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 22078721-22080720 Setaria italica
Seita.3G254900 2.0kb downstream 2.0kb downstream 8873 true scaffold_3: 22069848-22078720 Setaria italica
Seita.3G254900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 22069848-22071847 Setaria italica
Seita.3G254900 5.0kb upstream 5.0kb upstream 11873 true scaffold_3: 22071848-22083720 Setaria italica
Seita.3G254900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 22078721-22083720 Setaria italica
Seita.3G254900 5.0kb downstream 5.0kb downstream 11873 true scaffold_3: 22066848-22078720 Setaria italica
Seita.3G254900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 22066848-22071847 Setaria italica
Seita.3G254900 10.0kb upstream 10.0kb upstream 16873 true scaffold_3: 22071848-22088720 Setaria italica
Seita.3G254900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 22078721-22088720 Setaria italica
Seita.3G254900 10.0kb downstream 10.0kb downstream 16873 true scaffold_3: 22061848-22078720 Setaria italica
Seita.3G254900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 22061848-22071847 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178426 5267 Panicoideae View MSA
124574148 5269 Grass View MSA
122048232 5273 Angiosperm View MSA
121348274 5274 Embryophyte View MSA
123425887 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.243       High
cufflinks 5.032        
cufflinks 6.181        
cufflinks 6.618        
cufflinks 4.929       Low
cufflinks 5.409        
cufflinks 4.774       Low
cufflinks 5.62        
cufflinks 4.262       Low
cufflinks 5.302        
cufflinks 5.813        
cufflinks 7.571        
cufflinks 6.578        
cufflinks 5.442        
cufflinks 6.426        
cufflinks 6.661        
cufflinks 7.635       High
cufflinks 10.502       High
cufflinks 5.956        
cufflinks 6.537        

0 Strain