Gene : Seita.3G175900 S. italica v2.2
Defline:  (1 of 1) PTHR19858 - WD40 REPEAT PROTEIN Genomic Order:  1759
Name:  ? Seita.3G175900 Secondary Identifier:  ? PAC:32713372
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G175900 0.5kb upstream 0.5kb upstream 4766 true scaffold_3: 13029544-13034309 Setaria italica
Seita.3G175900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 13029544-13030043 Setaria italica
Seita.3G175900 0.5kb downstream 0.5kb downstream 4766 true scaffold_3: 13030044-13034809 Setaria italica
Seita.3G175900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 13034310-13034809 Setaria italica
Seita.3G175900 1.0kb upstream 1.0kb upstream 5266 true scaffold_3: 13029044-13034309 Setaria italica
Seita.3G175900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 13029044-13030043 Setaria italica
Seita.3G175900 1.0kb downstream 1.0kb downstream 5266 true scaffold_3: 13030044-13035309 Setaria italica
Seita.3G175900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 13034310-13035309 Setaria italica
Seita.3G175900 2.0kb upstream 2.0kb upstream 6266 true scaffold_3: 13028044-13034309 Setaria italica
Seita.3G175900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 13028044-13030043 Setaria italica
Seita.3G175900 2.0kb downstream 2.0kb downstream 6266 true scaffold_3: 13030044-13036309 Setaria italica
Seita.3G175900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 13034310-13036309 Setaria italica
Seita.3G175900 5.0kb upstream 5.0kb upstream 9266 true scaffold_3: 13025044-13034309 Setaria italica
Seita.3G175900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 13025044-13030043 Setaria italica
Seita.3G175900 5.0kb downstream 5.0kb downstream 9266 true scaffold_3: 13030044-13039309 Setaria italica
Seita.3G175900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 13034310-13039309 Setaria italica
Seita.3G175900 10.0kb upstream 10.0kb upstream 14266 true scaffold_3: 13020044-13034309 Setaria italica
Seita.3G175900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 13020044-13030043 Setaria italica
Seita.3G175900 10.0kb downstream 10.0kb downstream 14266 true scaffold_3: 13030044-13044309 Setaria italica
Seita.3G175900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 13034310-13044309 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190015 5267 Panicoideae View MSA
124571485 5269 Grass View MSA
122043279 5273 Angiosperm View MSA
121345886 5274 Embryophyte View MSA
123424187 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.247        
cufflinks 9.891       High
cufflinks 4.074        
cufflinks 1.418       Low
cufflinks 2.881       Low
cufflinks 11.61       High
cufflinks 5.028        
cufflinks 5.841        
cufflinks 6.692        
cufflinks 4.797        
cufflinks 8.568        
cufflinks 6.474        
cufflinks 4.227        
cufflinks 5.658        
cufflinks 10.783       High
cufflinks 3.789        
cufflinks 8.273        
cufflinks 4.341        
cufflinks 1.959       Low
cufflinks 8.853        

0 Strain