Gene : Seita.3G183900 S. italica v2.2
Defline:  (1 of 6) KOG1865 - Ubiquitin carboxyl-terminal hydrolase Genomic Order:  1839
Name:  ? Seita.3G183900 Secondary Identifier:  ? PAC:32712014
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G183900 0.5kb upstream 0.5kb upstream 6136 true scaffold_3: 13906578-13912713 Setaria italica
Seita.3G183900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 13912214-13912713 Setaria italica
Seita.3G183900 0.5kb downstream 0.5kb downstream 6136 true scaffold_3: 13906078-13912213 Setaria italica
Seita.3G183900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 13906078-13906577 Setaria italica
Seita.3G183900 1.0kb upstream 1.0kb upstream 6636 true scaffold_3: 13906578-13913213 Setaria italica
Seita.3G183900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 13912214-13913213 Setaria italica
Seita.3G183900 1.0kb downstream 1.0kb downstream 6636 true scaffold_3: 13905578-13912213 Setaria italica
Seita.3G183900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 13905578-13906577 Setaria italica
Seita.3G183900 2.0kb upstream 2.0kb upstream 7636 true scaffold_3: 13906578-13914213 Setaria italica
Seita.3G183900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 13912214-13914213 Setaria italica
Seita.3G183900 2.0kb downstream 2.0kb downstream 7636 true scaffold_3: 13904578-13912213 Setaria italica
Seita.3G183900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 13904578-13906577 Setaria italica
Seita.3G183900 5.0kb upstream 5.0kb upstream 10636 true scaffold_3: 13906578-13917213 Setaria italica
Seita.3G183900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 13912214-13917213 Setaria italica
Seita.3G183900 5.0kb downstream 5.0kb downstream 10636 true scaffold_3: 13901578-13912213 Setaria italica
Seita.3G183900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 13901578-13906577 Setaria italica
Seita.3G183900 10.0kb upstream 10.0kb upstream 15636 true scaffold_3: 13906578-13922213 Setaria italica
Seita.3G183900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 13912214-13922213 Setaria italica
Seita.3G183900 10.0kb downstream 10.0kb downstream 15636 true scaffold_3: 13896578-13912213 Setaria italica
Seita.3G183900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 13896578-13906577 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182916 5267 Panicoideae View MSA
124571102 5269 Grass View MSA
122045970 5273 Angiosperm View MSA
121346163 5274 Embryophyte View MSA
123428412 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.771     High High
cufflinks 13.603     High High
cufflinks 10.828     High  
cufflinks 10.945     High  
cufflinks 9.469       Low
cufflinks 13.889     High High
cufflinks 11.401        
cufflinks 11.423        
cufflinks 10.146        
cufflinks 8.837       Low
cufflinks 11.588        
cufflinks 12.916        
cufflinks 12.215        
cufflinks 9.173       Low
cufflinks 12.554        
cufflinks 12.791     High  
cufflinks 12.352        
cufflinks 12.578     High  
cufflinks 10.616        
cufflinks 12.482        

0 Strain