Gene : Seita.3G188300 S. italica v2.2
Genomic Order:  1883 Name:  ? Seita.3G188300
Secondary Identifier:  ? PAC:32714510
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G188300 0.5kb upstream 0.5kb upstream 2570 true scaffold_3: 14260196-14262765 Setaria italica
Seita.3G188300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 14260196-14260695 Setaria italica
Seita.3G188300 0.5kb downstream 0.5kb downstream 2570 true scaffold_3: 14260696-14263265 Setaria italica
Seita.3G188300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 14262766-14263265 Setaria italica
Seita.3G188300 1.0kb upstream 1.0kb upstream 3070 true scaffold_3: 14259696-14262765 Setaria italica
Seita.3G188300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 14259696-14260695 Setaria italica
Seita.3G188300 1.0kb downstream 1.0kb downstream 3070 true scaffold_3: 14260696-14263765 Setaria italica
Seita.3G188300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 14262766-14263765 Setaria italica
Seita.3G188300 2.0kb upstream 2.0kb upstream 4070 true scaffold_3: 14258696-14262765 Setaria italica
Seita.3G188300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 14258696-14260695 Setaria italica
Seita.3G188300 2.0kb downstream 2.0kb downstream 4070 true scaffold_3: 14260696-14264765 Setaria italica
Seita.3G188300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 14262766-14264765 Setaria italica
Seita.3G188300 5.0kb upstream 5.0kb upstream 7070 true scaffold_3: 14255696-14262765 Setaria italica
Seita.3G188300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 14255696-14260695 Setaria italica
Seita.3G188300 5.0kb downstream 5.0kb downstream 7070 true scaffold_3: 14260696-14267765 Setaria italica
Seita.3G188300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 14262766-14267765 Setaria italica
Seita.3G188300 10.0kb upstream 10.0kb upstream 12070 true scaffold_3: 14250696-14262765 Setaria italica
Seita.3G188300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 14250696-14260695 Setaria italica
Seita.3G188300 10.0kb downstream 10.0kb downstream 12070 true scaffold_3: 14260696-14272765 Setaria italica
Seita.3G188300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 14262766-14272765 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187815 5267 Panicoideae View MSA
124580163 5269 Grass View MSA
122050804 5273 Angiosperm View MSA
121312135 5274 Embryophyte View MSA
123349336 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.124        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.298       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.008     Low  
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain