Gene : Seita.3G197300 S. italica v2.2
Defline:  (1 of 1) PTHR11449//PTHR11449:SF3 - RIBOSOMAL PROTEIN L30 Genomic Order:  1973
Name:  ? Seita.3G197300 Secondary Identifier:  ? PAC:32711440
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G197300 0.5kb upstream 0.5kb upstream 2758 true scaffold_3: 14964895-14967652 Setaria italica
Seita.3G197300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 14967153-14967652 Setaria italica
Seita.3G197300 0.5kb downstream 0.5kb downstream 2758 true scaffold_3: 14964395-14967152 Setaria italica
Seita.3G197300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 14964395-14964894 Setaria italica
Seita.3G197300 1.0kb upstream 1.0kb upstream 3258 true scaffold_3: 14964895-14968152 Setaria italica
Seita.3G197300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 14967153-14968152 Setaria italica
Seita.3G197300 1.0kb downstream 1.0kb downstream 3258 true scaffold_3: 14963895-14967152 Setaria italica
Seita.3G197300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 14963895-14964894 Setaria italica
Seita.3G197300 2.0kb upstream 2.0kb upstream 4258 true scaffold_3: 14964895-14969152 Setaria italica
Seita.3G197300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 14967153-14969152 Setaria italica
Seita.3G197300 2.0kb downstream 2.0kb downstream 4258 true scaffold_3: 14962895-14967152 Setaria italica
Seita.3G197300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 14962895-14964894 Setaria italica
Seita.3G197300 5.0kb upstream 5.0kb upstream 7258 true scaffold_3: 14964895-14972152 Setaria italica
Seita.3G197300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 14967153-14972152 Setaria italica
Seita.3G197300 5.0kb downstream 5.0kb downstream 7258 true scaffold_3: 14959895-14967152 Setaria italica
Seita.3G197300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 14959895-14964894 Setaria italica
Seita.3G197300 10.0kb upstream 10.0kb upstream 12258 true scaffold_3: 14964895-14977152 Setaria italica
Seita.3G197300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 14967153-14977152 Setaria italica
Seita.3G197300 10.0kb downstream 10.0kb downstream 12258 true scaffold_3: 14954895-14967152 Setaria italica
Seita.3G197300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 14954895-14964894 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191979 5267 Panicoideae View MSA
124586289 5269 Grass View MSA
122051684 5273 Angiosperm View MSA
121344063 5274 Embryophyte View MSA
123425041 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.394     High  
cufflinks 58.451     High  
cufflinks 12.225     High Low
cufflinks 9.44       Low
cufflinks 18.59     High Low
cufflinks 70.997     High  
cufflinks 38.813     High  
cufflinks 86.06     High High
cufflinks 85.091     High High
cufflinks 101.157     High High
cufflinks 50.124     High  
cufflinks 43.362     High  
cufflinks 41.484     High  
cufflinks 24.572     High  
cufflinks 47.027     High  
cufflinks 21.946     High  
cufflinks 67.248     High  
cufflinks 14.761     High Low
cufflinks 18.616     High Low
cufflinks 62.026     High  

0 Strain