Gene : Seita.3G196900 S. italica v2.2
Defline:  (1 of 5) 2.7.1.137 - Phosphatidylinositol 3-kinase / Type III phosphoinositide 3-kinase Genomic Order:  1969
Name:  ? Seita.3G196900 Secondary Identifier:  ? PAC:32712412
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6352 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G196900 0.5kb upstream 0.5kb upstream 2895 true scaffold_3: 14942763-14945657 Setaria italica
Seita.3G196900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 14942763-14943262 Setaria italica
Seita.3G196900 0.5kb downstream 0.5kb downstream 2895 true scaffold_3: 14943263-14946157 Setaria italica
Seita.3G196900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 14945658-14946157 Setaria italica
Seita.3G196900 1.0kb upstream 1.0kb upstream 3395 true scaffold_3: 14942263-14945657 Setaria italica
Seita.3G196900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 14942263-14943262 Setaria italica
Seita.3G196900 1.0kb downstream 1.0kb downstream 3395 true scaffold_3: 14943263-14946657 Setaria italica
Seita.3G196900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 14945658-14946657 Setaria italica
Seita.3G196900 2.0kb upstream 2.0kb upstream 4395 true scaffold_3: 14941263-14945657 Setaria italica
Seita.3G196900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 14941263-14943262 Setaria italica
Seita.3G196900 2.0kb downstream 2.0kb downstream 4395 true scaffold_3: 14943263-14947657 Setaria italica
Seita.3G196900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 14945658-14947657 Setaria italica
Seita.3G196900 5.0kb upstream 5.0kb upstream 7395 true scaffold_3: 14938263-14945657 Setaria italica
Seita.3G196900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 14938263-14943262 Setaria italica
Seita.3G196900 5.0kb downstream 5.0kb downstream 7395 true scaffold_3: 14943263-14950657 Setaria italica
Seita.3G196900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 14945658-14950657 Setaria italica
Seita.3G196900 10.0kb upstream 10.0kb upstream 12395 true scaffold_3: 14933263-14945657 Setaria italica
Seita.3G196900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 14933263-14943262 Setaria italica
Seita.3G196900 10.0kb downstream 10.0kb downstream 12395 true scaffold_3: 14943263-14955657 Setaria italica
Seita.3G196900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 14945658-14955657 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187263 5267 Panicoideae View MSA
124585937 5269 Grass View MSA
122042854 5273 Angiosperm View MSA
121346358 5274 Embryophyte View MSA
123428663 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.155        
cufflinks 5.127        
cufflinks 0.709       Low
cufflinks 0.7       Low
cufflinks 0.609       Low
cufflinks 6.145        
cufflinks 2.104        
cufflinks 2.282        
cufflinks 1.887        
cufflinks 4.146        
cufflinks 3.938        
cufflinks 11.057       High
cufflinks 6.64        
cufflinks 1.749        
cufflinks 5.3        
cufflinks 1.823        
cufflinks 7.653       High
cufflinks 1.916        
cufflinks 1.763        
cufflinks 10.257       High

0 Strain