Gene : Seita.3G202900 S. italica v2.2
Defline:  (1 of 14) PF00560//PF07714//PF08263 - Leucine Rich Repeat (LRR_1) // Protein tyrosine kinase (Pkinase_Tyr) // Leucine rich repeat N-terminal domain (LRRNT_2) Genomic Order:  2029
Name:  ? Seita.3G202900 Secondary Identifier:  ? PAC:32710507
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G202900 0.5kb upstream 0.5kb upstream 6644 true scaffold_3: 15509342-15515985 Setaria italica
Seita.3G202900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 15509342-15509841 Setaria italica
Seita.3G202900 0.5kb downstream 0.5kb downstream 6644 true scaffold_3: 15509842-15516485 Setaria italica
Seita.3G202900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 15515986-15516485 Setaria italica
Seita.3G202900 1.0kb upstream 1.0kb upstream 7144 true scaffold_3: 15508842-15515985 Setaria italica
Seita.3G202900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 15508842-15509841 Setaria italica
Seita.3G202900 1.0kb downstream 1.0kb downstream 7144 true scaffold_3: 15509842-15516985 Setaria italica
Seita.3G202900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 15515986-15516985 Setaria italica
Seita.3G202900 2.0kb upstream 2.0kb upstream 8144 true scaffold_3: 15507842-15515985 Setaria italica
Seita.3G202900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 15507842-15509841 Setaria italica
Seita.3G202900 2.0kb downstream 2.0kb downstream 8144 true scaffold_3: 15509842-15517985 Setaria italica
Seita.3G202900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 15515986-15517985 Setaria italica
Seita.3G202900 5.0kb upstream 5.0kb upstream 11144 true scaffold_3: 15504842-15515985 Setaria italica
Seita.3G202900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 15504842-15509841 Setaria italica
Seita.3G202900 5.0kb downstream 5.0kb downstream 11144 true scaffold_3: 15509842-15520985 Setaria italica
Seita.3G202900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 15515986-15520985 Setaria italica
Seita.3G202900 10.0kb upstream 10.0kb upstream 16144 true scaffold_3: 15499842-15515985 Setaria italica
Seita.3G202900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 15499842-15509841 Setaria italica
Seita.3G202900 10.0kb downstream 10.0kb downstream 16144 true scaffold_3: 15509842-15525985 Setaria italica
Seita.3G202900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 15515986-15525985 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187827 5267 Panicoideae View MSA
124578906 5269 Grass View MSA
122049764 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351227 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.021        
cufflinks 18.329     High High
cufflinks 0.105       Low
cufflinks 0.146       Low
cufflinks 0.701        
cufflinks 18.309     High High
cufflinks 8.269        
cufflinks 1.82        
cufflinks 3.453        
cufflinks 4.555        
cufflinks 6.289        
cufflinks 3.751        
cufflinks 4.774        
cufflinks 0.132       Low
cufflinks 14.148     High High
cufflinks 2.763        
cufflinks 6.731        
cufflinks 1.171        
cufflinks 0.212       Low
cufflinks 10.846        

0 Strain