Gene : Seita.3G211900 S. italica v2.2
Defline:  (1 of 1) PTHR12210//PTHR12210:SF72 - NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED Genomic Order:  2119
Name:  ? Seita.3G211900 Secondary Identifier:  ? PAC:32712702
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G211900 0.5kb upstream 0.5kb upstream 2907 true scaffold_3: 17056545-17059451 Setaria italica
Seita.3G211900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 17058952-17059451 Setaria italica
Seita.3G211900 0.5kb downstream 0.5kb downstream 2907 true scaffold_3: 17056045-17058951 Setaria italica
Seita.3G211900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 17056045-17056544 Setaria italica
Seita.3G211900 1.0kb upstream 1.0kb upstream 3407 true scaffold_3: 17056545-17059951 Setaria italica
Seita.3G211900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 17058952-17059951 Setaria italica
Seita.3G211900 1.0kb downstream 1.0kb downstream 3407 true scaffold_3: 17055545-17058951 Setaria italica
Seita.3G211900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 17055545-17056544 Setaria italica
Seita.3G211900 2.0kb upstream 2.0kb upstream 4407 true scaffold_3: 17056545-17060951 Setaria italica
Seita.3G211900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 17058952-17060951 Setaria italica
Seita.3G211900 2.0kb downstream 2.0kb downstream 4407 true scaffold_3: 17054545-17058951 Setaria italica
Seita.3G211900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 17054545-17056544 Setaria italica
Seita.3G211900 5.0kb upstream 5.0kb upstream 7407 true scaffold_3: 17056545-17063951 Setaria italica
Seita.3G211900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 17058952-17063951 Setaria italica
Seita.3G211900 5.0kb downstream 5.0kb downstream 7407 true scaffold_3: 17051545-17058951 Setaria italica
Seita.3G211900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 17051545-17056544 Setaria italica
Seita.3G211900 10.0kb upstream 10.0kb upstream 12407 true scaffold_3: 17056545-17068951 Setaria italica
Seita.3G211900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 17058952-17068951 Setaria italica
Seita.3G211900 10.0kb downstream 10.0kb downstream 12407 true scaffold_3: 17046545-17058951 Setaria italica
Seita.3G211900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 17046545-17056544 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177627 5267 Panicoideae View MSA
124582186 5269 Grass View MSA
122050524 5273 Angiosperm View MSA
123429149 5275 Viridiplantae View MSA
121311967 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.0        
cufflinks 7.581        
cufflinks 11.883     High  
cufflinks 10.987     High  
cufflinks 5.659        
cufflinks 8.009        
cufflinks 6.042        
cufflinks 10.217        
cufflinks 3.021       Low
cufflinks 11.031        
cufflinks 6.817        
cufflinks 9.762        
cufflinks 10.161        
cufflinks 16.394     High High
cufflinks 11.913        
cufflinks 4.515       Low
cufflinks 13.388       High
cufflinks 6.532        
cufflinks 11.303     High  
cufflinks 8.976        

0 Strain