Gene : Seita.3G299600 S. italica v2.2
Defline:  (1 of 3) PTHR19372 - SULFITE REDUCTASE Genomic Order:  2996
Name:  ? Seita.3G299600 Secondary Identifier:  ? PAC:32714096
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5326 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G299600 0.5kb upstream 0.5kb upstream 4814 true scaffold_3: 34160237-34165050 Setaria italica
Seita.3G299600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 34164551-34165050 Setaria italica
Seita.3G299600 0.5kb downstream 0.5kb downstream 4814 true scaffold_3: 34159737-34164550 Setaria italica
Seita.3G299600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 34159737-34160236 Setaria italica
Seita.3G299600 1.0kb upstream 1.0kb upstream 5314 true scaffold_3: 34160237-34165550 Setaria italica
Seita.3G299600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 34164551-34165550 Setaria italica
Seita.3G299600 1.0kb downstream 1.0kb downstream 5314 true scaffold_3: 34159237-34164550 Setaria italica
Seita.3G299600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 34159237-34160236 Setaria italica
Seita.3G299600 2.0kb upstream 2.0kb upstream 6314 true scaffold_3: 34160237-34166550 Setaria italica
Seita.3G299600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 34164551-34166550 Setaria italica
Seita.3G299600 2.0kb downstream 2.0kb downstream 6314 true scaffold_3: 34158237-34164550 Setaria italica
Seita.3G299600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 34158237-34160236 Setaria italica
Seita.3G299600 5.0kb upstream 5.0kb upstream 9314 true scaffold_3: 34160237-34169550 Setaria italica
Seita.3G299600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 34164551-34169550 Setaria italica
Seita.3G299600 5.0kb downstream 5.0kb downstream 9314 true scaffold_3: 34155237-34164550 Setaria italica
Seita.3G299600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 34155237-34160236 Setaria italica
Seita.3G299600 10.0kb upstream 10.0kb upstream 14314 true scaffold_3: 34160237-34174550 Setaria italica
Seita.3G299600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 34164551-34174550 Setaria italica
Seita.3G299600 10.0kb downstream 10.0kb downstream 14314 true scaffold_3: 34150237-34164550 Setaria italica
Seita.3G299600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 34150237-34160236 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192208 5267 Panicoideae View MSA
124568443 5269 Grass View MSA
122044053 5273 Angiosperm View MSA
121351692 5274 Embryophyte View MSA
123426771 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.831        
cufflinks 0.808        
cufflinks 0.163       Low
cufflinks 0.117       Low
cufflinks 0.097       Low
cufflinks 0.613        
cufflinks 0.252        
cufflinks 0.378        
cufflinks 0.476        
cufflinks 1.54        
cufflinks 1.119        
cufflinks 3.1       High
cufflinks 0.533        
cufflinks 0.34        
cufflinks 2.162       High
cufflinks 0.215        
cufflinks 7.892       High
cufflinks 0.148       Low
cufflinks 0.192        
cufflinks 1.099        

0 Strain