Gene : Seita.3G307400 S. italica v2.2
Defline:  (1 of 10) PF11891 - Domain of unknown function (DUF3411) (DUF3411) Genomic Order:  3074
Name:  ? Seita.3G307400 Secondary Identifier:  ? PAC:32709912
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G307400 0.5kb upstream 0.5kb upstream 8750 true scaffold_3: 36336126-36344875 Setaria italica
Seita.3G307400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 36336126-36336625 Setaria italica
Seita.3G307400 0.5kb downstream 0.5kb downstream 8750 true scaffold_3: 36336626-36345375 Setaria italica
Seita.3G307400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 36344876-36345375 Setaria italica
Seita.3G307400 1.0kb upstream 1.0kb upstream 9250 true scaffold_3: 36335626-36344875 Setaria italica
Seita.3G307400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 36335626-36336625 Setaria italica
Seita.3G307400 1.0kb downstream 1.0kb downstream 9250 true scaffold_3: 36336626-36345875 Setaria italica
Seita.3G307400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 36344876-36345875 Setaria italica
Seita.3G307400 2.0kb upstream 2.0kb upstream 10250 true scaffold_3: 36334626-36344875 Setaria italica
Seita.3G307400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 36334626-36336625 Setaria italica
Seita.3G307400 2.0kb downstream 2.0kb downstream 10250 true scaffold_3: 36336626-36346875 Setaria italica
Seita.3G307400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 36344876-36346875 Setaria italica
Seita.3G307400 5.0kb upstream 5.0kb upstream 13250 true scaffold_3: 36331626-36344875 Setaria italica
Seita.3G307400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 36331626-36336625 Setaria italica
Seita.3G307400 5.0kb downstream 5.0kb downstream 13250 true scaffold_3: 36336626-36349875 Setaria italica
Seita.3G307400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 36344876-36349875 Setaria italica
Seita.3G307400 10.0kb upstream 10.0kb upstream 18250 true scaffold_3: 36326626-36344875 Setaria italica
Seita.3G307400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 36326626-36336625 Setaria italica
Seita.3G307400 10.0kb downstream 10.0kb downstream 18250 true scaffold_3: 36336626-36354875 Setaria italica
Seita.3G307400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 36344876-36354875 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041223 5273 Angiosperm View MSA
122187575 5267 Panicoideae View MSA
124577775 5269 Grass View MSA
121346356 5274 Embryophyte View MSA
123428208 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.508     High  
cufflinks 11.321        
cufflinks 11.093     High  
cufflinks 10.392        
cufflinks 18.33     High  
cufflinks 13.465     High  
cufflinks 25.087     High High
cufflinks 23.894     High High
cufflinks 41.802     High High
cufflinks 10.891        
cufflinks 13.854     High  
cufflinks 14.288     High  
cufflinks 9.622       Low
cufflinks 13.946     High  
cufflinks 9.133       Low
cufflinks 25.473     High High
cufflinks 13.303        
cufflinks 28.694     High High
cufflinks 12.868     High  
cufflinks 11.109        

0 Strain