Gene : Seita.3G342900 S. italica v2.2
Defline:  (1 of 1) PTHR11741:SF3 - ELONGATION FACTOR TS Genomic Order:  3429
Name:  ? Seita.3G342900 Secondary Identifier:  ? PAC:32713229
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G342900 0.5kb upstream 0.5kb upstream 6143 true scaffold_3: 44168175-44174317 Setaria italica
Seita.3G342900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 44173818-44174317 Setaria italica
Seita.3G342900 0.5kb downstream 0.5kb downstream 6143 true scaffold_3: 44167675-44173817 Setaria italica
Seita.3G342900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 44167675-44168174 Setaria italica
Seita.3G342900 1.0kb upstream 1.0kb upstream 6643 true scaffold_3: 44168175-44174817 Setaria italica
Seita.3G342900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 44173818-44174817 Setaria italica
Seita.3G342900 1.0kb downstream 1.0kb downstream 6643 true scaffold_3: 44167175-44173817 Setaria italica
Seita.3G342900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 44167175-44168174 Setaria italica
Seita.3G342900 2.0kb upstream 2.0kb upstream 7643 true scaffold_3: 44168175-44175817 Setaria italica
Seita.3G342900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 44173818-44175817 Setaria italica
Seita.3G342900 2.0kb downstream 2.0kb downstream 7643 true scaffold_3: 44166175-44173817 Setaria italica
Seita.3G342900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 44166175-44168174 Setaria italica
Seita.3G342900 5.0kb upstream 5.0kb upstream 10643 true scaffold_3: 44168175-44178817 Setaria italica
Seita.3G342900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 44173818-44178817 Setaria italica
Seita.3G342900 5.0kb downstream 5.0kb downstream 10643 true scaffold_3: 44163175-44173817 Setaria italica
Seita.3G342900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 44163175-44168174 Setaria italica
Seita.3G342900 10.0kb upstream 10.0kb upstream 15643 true scaffold_3: 44168175-44183817 Setaria italica
Seita.3G342900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 44173818-44183817 Setaria italica
Seita.3G342900 10.0kb downstream 10.0kb downstream 15643 true scaffold_3: 44158175-44173817 Setaria italica
Seita.3G342900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 44158175-44168174 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197693 5267 Panicoideae View MSA
124575986 5269 Grass View MSA
122043954 5273 Angiosperm View MSA
121346485 5274 Embryophyte View MSA
123425241 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 51.286     High  
cufflinks 30.837     High  
cufflinks 24.248     High  
cufflinks 14.027     High  
cufflinks 78.539     High  
cufflinks 27.751     High  
cufflinks 128.179     High High
cufflinks 102.555     High  
cufflinks 279.817     High High
cufflinks 10.438        
cufflinks 31.034     High  
cufflinks 1.291       Low
cufflinks 2.697       Low
cufflinks 35.887     High  
cufflinks 2.24       Low
cufflinks 150.432     High High
cufflinks 1.927       Low
cufflinks 34.332     High  
cufflinks 47.851     High  
cufflinks 2.011       Low

0 Strain