Gene : Seita.3G261000 S. italica v2.2
Defline:  (1 of 3) 3.2.2.23 - DNA-formamidopyrimidine glycosylase / Formamidopyrimidine-DNA glycosylase Genomic Order:  2610
Name:  ? Seita.3G261000 Secondary Identifier:  ? PAC:32710996
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G261000 0.5kb upstream 0.5kb upstream 7664 true scaffold_3: 22729579-22737242 Setaria italica
Seita.3G261000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 22736743-22737242 Setaria italica
Seita.3G261000 0.5kb downstream 0.5kb downstream 7664 true scaffold_3: 22729079-22736742 Setaria italica
Seita.3G261000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 22729079-22729578 Setaria italica
Seita.3G261000 1.0kb upstream 1.0kb upstream 8164 true scaffold_3: 22729579-22737742 Setaria italica
Seita.3G261000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 22736743-22737742 Setaria italica
Seita.3G261000 1.0kb downstream 1.0kb downstream 8164 true scaffold_3: 22728579-22736742 Setaria italica
Seita.3G261000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 22728579-22729578 Setaria italica
Seita.3G261000 2.0kb upstream 2.0kb upstream 9164 true scaffold_3: 22729579-22738742 Setaria italica
Seita.3G261000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 22736743-22738742 Setaria italica
Seita.3G261000 2.0kb downstream 2.0kb downstream 9164 true scaffold_3: 22727579-22736742 Setaria italica
Seita.3G261000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 22727579-22729578 Setaria italica
Seita.3G261000 5.0kb upstream 5.0kb upstream 12164 true scaffold_3: 22729579-22741742 Setaria italica
Seita.3G261000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 22736743-22741742 Setaria italica
Seita.3G261000 5.0kb downstream 5.0kb downstream 12164 true scaffold_3: 22724579-22736742 Setaria italica
Seita.3G261000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 22724579-22729578 Setaria italica
Seita.3G261000 10.0kb upstream 10.0kb upstream 17164 true scaffold_3: 22729579-22746742 Setaria italica
Seita.3G261000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 22736743-22746742 Setaria italica
Seita.3G261000 10.0kb downstream 10.0kb downstream 17164 true scaffold_3: 22719579-22736742 Setaria italica
Seita.3G261000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 22719579-22729578 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183260 5267 Panicoideae View MSA
124569340 5269 Grass View MSA
122048986 5273 Angiosperm View MSA
121348452 5274 Embryophyte View MSA
123427632 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.88        
cufflinks 4.103       High
cufflinks 0.619       Low
cufflinks 0.642       Low
cufflinks 0.707        
cufflinks 3.973       High
cufflinks 2.043        
cufflinks 2.723       High
cufflinks 1.481        
cufflinks 0.643       Low
cufflinks 1.742        
cufflinks 1.765        
cufflinks 0.828        
cufflinks 0.418       Low
cufflinks 1.834        
cufflinks 1.776        
cufflinks 2.005        
cufflinks 1.685        
cufflinks 0.34       Low
cufflinks 2.002        

0 Strain