Gene : Seita.3G280900 S. italica v2.2
Defline:  (1 of 1) PTHR10555//PTHR10555:SF155 - SORTING NEXIN Genomic Order:  2809
Name:  ? Seita.3G280900 Secondary Identifier:  ? PAC:32713371
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G280900 0.5kb upstream 0.5kb upstream 4544 true scaffold_3: 25988834-25993377 Setaria italica
Seita.3G280900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 25988834-25989333 Setaria italica
Seita.3G280900 0.5kb downstream 0.5kb downstream 4544 true scaffold_3: 25989334-25993877 Setaria italica
Seita.3G280900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 25993378-25993877 Setaria italica
Seita.3G280900 1.0kb upstream 1.0kb upstream 5044 true scaffold_3: 25988334-25993377 Setaria italica
Seita.3G280900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 25988334-25989333 Setaria italica
Seita.3G280900 1.0kb downstream 1.0kb downstream 5044 true scaffold_3: 25989334-25994377 Setaria italica
Seita.3G280900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 25993378-25994377 Setaria italica
Seita.3G280900 2.0kb upstream 2.0kb upstream 6044 true scaffold_3: 25987334-25993377 Setaria italica
Seita.3G280900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 25987334-25989333 Setaria italica
Seita.3G280900 2.0kb downstream 2.0kb downstream 6044 true scaffold_3: 25989334-25995377 Setaria italica
Seita.3G280900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 25993378-25995377 Setaria italica
Seita.3G280900 5.0kb upstream 5.0kb upstream 9044 true scaffold_3: 25984334-25993377 Setaria italica
Seita.3G280900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 25984334-25989333 Setaria italica
Seita.3G280900 5.0kb downstream 5.0kb downstream 9044 true scaffold_3: 25989334-25998377 Setaria italica
Seita.3G280900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 25993378-25998377 Setaria italica
Seita.3G280900 10.0kb upstream 10.0kb upstream 14044 true scaffold_3: 25979334-25993377 Setaria italica
Seita.3G280900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 25979334-25989333 Setaria italica
Seita.3G280900 10.0kb downstream 10.0kb downstream 14044 true scaffold_3: 25989334-26003377 Setaria italica
Seita.3G280900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 25993378-26003377 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041026 5273 Angiosperm View MSA
122190014 5267 Panicoideae View MSA
124588439 5269 Grass View MSA
121345182 5274 Embryophyte View MSA
123428162 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.372        
cufflinks 7.708        
cufflinks 47.16     High High
cufflinks 32.993     High High
cufflinks 16.269     High  
cufflinks 8.315        
cufflinks 7.385        
cufflinks 17.277     High  
cufflinks 5.593        
cufflinks 8.032        
cufflinks 7.88        
cufflinks 7.167        
cufflinks 5.89        
cufflinks 39.461     High High
cufflinks 6.656        
cufflinks 7.946        
cufflinks 6.942        
cufflinks 8.778        
cufflinks 27.947     High High
cufflinks 6.72        

0 Strain