Gene : Seita.3G290100 S. italica v2.2
Defline:  (1 of 1) PTHR11695:SF31 - GROES-LIKE ZINC-BINDING ALCOHOL DEHYDROGENASE FAMILY PROTEIN Genomic Order:  2901
Name:  ? Seita.3G290100 Secondary Identifier:  ? PAC:32713982
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G290100 0.5kb upstream 0.5kb upstream 8788 true scaffold_3: 28039599-28048386 Setaria italica
Seita.3G290100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 28047887-28048386 Setaria italica
Seita.3G290100 0.5kb downstream 0.5kb downstream 8788 true scaffold_3: 28039099-28047886 Setaria italica
Seita.3G290100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 28039099-28039598 Setaria italica
Seita.3G290100 1.0kb upstream 1.0kb upstream 9288 true scaffold_3: 28039599-28048886 Setaria italica
Seita.3G290100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 28047887-28048886 Setaria italica
Seita.3G290100 1.0kb downstream 1.0kb downstream 9288 true scaffold_3: 28038599-28047886 Setaria italica
Seita.3G290100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 28038599-28039598 Setaria italica
Seita.3G290100 2.0kb upstream 2.0kb upstream 10288 true scaffold_3: 28039599-28049886 Setaria italica
Seita.3G290100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 28047887-28049886 Setaria italica
Seita.3G290100 2.0kb downstream 2.0kb downstream 10288 true scaffold_3: 28037599-28047886 Setaria italica
Seita.3G290100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 28037599-28039598 Setaria italica
Seita.3G290100 5.0kb upstream 5.0kb upstream 13288 true scaffold_3: 28039599-28052886 Setaria italica
Seita.3G290100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 28047887-28052886 Setaria italica
Seita.3G290100 5.0kb downstream 5.0kb downstream 13288 true scaffold_3: 28034599-28047886 Setaria italica
Seita.3G290100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 28034599-28039598 Setaria italica
Seita.3G290100 10.0kb upstream 10.0kb upstream 18288 true scaffold_3: 28039599-28057886 Setaria italica
Seita.3G290100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 28047887-28057886 Setaria italica
Seita.3G290100 10.0kb downstream 10.0kb downstream 18288 true scaffold_3: 28029599-28047886 Setaria italica
Seita.3G290100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 28029599-28039598 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177494 5267 Panicoideae View MSA
124569661 5269 Grass View MSA
122047129 5273 Angiosperm View MSA
121347659 5274 Embryophyte View MSA
123428381 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.283       Low
cufflinks 3.179        
cufflinks 2.819        
cufflinks 2.885        
cufflinks 2.581        
cufflinks 3.258        
cufflinks 1.73        
cufflinks 2.994        
cufflinks 2.346        
cufflinks 2.891        
cufflinks 1.546       Low
cufflinks 4.418       High
cufflinks 4.155        
cufflinks 4.041        
cufflinks 3.951        
cufflinks 1.101       Low
cufflinks 4.76       High
cufflinks 1.306       Low
cufflinks 3.431        
cufflinks 4.325       High

0 Strain