Gene : Seita.3G289900 S. italica v2.2
Defline:  (1 of 62) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  2899
Name:  ? Seita.3G289900 Secondary Identifier:  ? PAC:32713159
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G289900 0.5kb upstream 0.5kb upstream 5543 true scaffold_3: 28020721-28026263 Setaria italica
Seita.3G289900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 28020721-28021220 Setaria italica
Seita.3G289900 0.5kb downstream 0.5kb downstream 5543 true scaffold_3: 28021221-28026763 Setaria italica
Seita.3G289900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 28026264-28026763 Setaria italica
Seita.3G289900 1.0kb upstream 1.0kb upstream 6043 true scaffold_3: 28020221-28026263 Setaria italica
Seita.3G289900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 28020221-28021220 Setaria italica
Seita.3G289900 1.0kb downstream 1.0kb downstream 6043 true scaffold_3: 28021221-28027263 Setaria italica
Seita.3G289900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 28026264-28027263 Setaria italica
Seita.3G289900 2.0kb upstream 2.0kb upstream 7043 true scaffold_3: 28019221-28026263 Setaria italica
Seita.3G289900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 28019221-28021220 Setaria italica
Seita.3G289900 2.0kb downstream 2.0kb downstream 7043 true scaffold_3: 28021221-28028263 Setaria italica
Seita.3G289900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 28026264-28028263 Setaria italica
Seita.3G289900 5.0kb upstream 5.0kb upstream 10043 true scaffold_3: 28016221-28026263 Setaria italica
Seita.3G289900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 28016221-28021220 Setaria italica
Seita.3G289900 5.0kb downstream 5.0kb downstream 10043 true scaffold_3: 28021221-28031263 Setaria italica
Seita.3G289900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 28026264-28031263 Setaria italica
Seita.3G289900 10.0kb upstream 10.0kb upstream 15043 true scaffold_3: 28011221-28026263 Setaria italica
Seita.3G289900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 28011221-28021220 Setaria italica
Seita.3G289900 10.0kb downstream 10.0kb downstream 15043 true scaffold_3: 28021221-28036263 Setaria italica
Seita.3G289900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 28026264-28036263 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178472 5267 Panicoideae View MSA
124572170 5269 Grass View MSA
122046765 5273 Angiosperm View MSA
121310656 5274 Embryophyte View MSA
123348085 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.616        
cufflinks 1.057       High
cufflinks 0.468        
cufflinks 0.148       Low
cufflinks 0.22       Low
cufflinks 0.899       High
cufflinks 0.503        
cufflinks 0.471        
cufflinks 0.403        
cufflinks 0.342        
cufflinks 0.494        
cufflinks 0.703        
cufflinks 0.253       Low
cufflinks 0.995       High
cufflinks 0.62        
cufflinks 0.447        
cufflinks 0.836       High
cufflinks 0.353        
cufflinks 0.164       Low
cufflinks 0.779        

0 Strain