Gene : Seita.3G386100 S. italica v2.2
Defline:  (1 of 2) PTHR12496 - CGI-41 METHYLTRANSFERASE Genomic Order:  3861
Name:  ? Seita.3G386100 Secondary Identifier:  ? PAC:32714080
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G386100 0.5kb upstream 0.5kb upstream 8654 true scaffold_3: 48743290-48751943 Setaria italica
Seita.3G386100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 48743290-48743789 Setaria italica
Seita.3G386100 0.5kb downstream 0.5kb downstream 8654 true scaffold_3: 48743790-48752443 Setaria italica
Seita.3G386100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 48751944-48752443 Setaria italica
Seita.3G386100 1.0kb upstream 1.0kb upstream 9154 true scaffold_3: 48742790-48751943 Setaria italica
Seita.3G386100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 48742790-48743789 Setaria italica
Seita.3G386100 1.0kb downstream 1.0kb downstream 9154 true scaffold_3: 48743790-48752943 Setaria italica
Seita.3G386100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 48751944-48752943 Setaria italica
Seita.3G386100 2.0kb upstream 2.0kb upstream 10154 true scaffold_3: 48741790-48751943 Setaria italica
Seita.3G386100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 48741790-48743789 Setaria italica
Seita.3G386100 2.0kb downstream 2.0kb downstream 10154 true scaffold_3: 48743790-48753943 Setaria italica
Seita.3G386100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 48751944-48753943 Setaria italica
Seita.3G386100 5.0kb upstream 5.0kb upstream 13154 true scaffold_3: 48738790-48751943 Setaria italica
Seita.3G386100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 48738790-48743789 Setaria italica
Seita.3G386100 5.0kb downstream 5.0kb downstream 13154 true scaffold_3: 48743790-48756943 Setaria italica
Seita.3G386100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 48751944-48756943 Setaria italica
Seita.3G386100 10.0kb upstream 10.0kb upstream 18154 true scaffold_3: 48733790-48751943 Setaria italica
Seita.3G386100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 48733790-48743789 Setaria italica
Seita.3G386100 10.0kb downstream 10.0kb downstream 18154 true scaffold_3: 48743790-48761943 Setaria italica
Seita.3G386100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 48751944-48761943 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041435 5273 Angiosperm View MSA
122178374 5267 Panicoideae View MSA
124574700 5269 Grass View MSA
121344340 5274 Embryophyte View MSA
123380024 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.963       High
cufflinks 1.303        
cufflinks 1.169        
cufflinks 1.081        
cufflinks 0.772       Low
cufflinks 1.099        
cufflinks 1.161        
cufflinks 0.979        
cufflinks 0.749       Low
cufflinks 1.131        
cufflinks 1.474        
cufflinks 1.312        
cufflinks 1.176        
cufflinks 1.034        
cufflinks 1.31        
cufflinks 1.99       High
cufflinks 1.204        
cufflinks 2.128       High
cufflinks 0.933        
cufflinks 0.993        

0 Strain