Gene : Seita.3G386400 S. italica v2.2
Defline:  (1 of 7) PF06943 - LSD1 zinc finger (zf-LSD1) Genomic Order:  3864
Name:  ? Seita.3G386400 Secondary Identifier:  ? PAC:32713757
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G386400 0.5kb upstream 0.5kb upstream 4516 true scaffold_3: 48762140-48766655 Setaria italica
Seita.3G386400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 48766156-48766655 Setaria italica
Seita.3G386400 0.5kb downstream 0.5kb downstream 4516 true scaffold_3: 48761640-48766155 Setaria italica
Seita.3G386400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 48761640-48762139 Setaria italica
Seita.3G386400 1.0kb upstream 1.0kb upstream 5016 true scaffold_3: 48762140-48767155 Setaria italica
Seita.3G386400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 48766156-48767155 Setaria italica
Seita.3G386400 1.0kb downstream 1.0kb downstream 5016 true scaffold_3: 48761140-48766155 Setaria italica
Seita.3G386400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 48761140-48762139 Setaria italica
Seita.3G386400 2.0kb upstream 2.0kb upstream 6016 true scaffold_3: 48762140-48768155 Setaria italica
Seita.3G386400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 48766156-48768155 Setaria italica
Seita.3G386400 2.0kb downstream 2.0kb downstream 6016 true scaffold_3: 48760140-48766155 Setaria italica
Seita.3G386400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 48760140-48762139 Setaria italica
Seita.3G386400 5.0kb upstream 5.0kb upstream 9016 true scaffold_3: 48762140-48771155 Setaria italica
Seita.3G386400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 48766156-48771155 Setaria italica
Seita.3G386400 5.0kb downstream 5.0kb downstream 9016 true scaffold_3: 48757140-48766155 Setaria italica
Seita.3G386400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 48757140-48762139 Setaria italica
Seita.3G386400 10.0kb upstream 10.0kb upstream 14016 true scaffold_3: 48762140-48776155 Setaria italica
Seita.3G386400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 48766156-48776155 Setaria italica
Seita.3G386400 10.0kb downstream 10.0kb downstream 14016 true scaffold_3: 48752140-48766155 Setaria italica
Seita.3G386400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 48752140-48762139 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184583 5267 Panicoideae View MSA
124585557 5269 Grass View MSA
122043941 5273 Angiosperm View MSA
121347680 5274 Embryophyte View MSA
123425652 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.253        
cufflinks 5.066       Low
cufflinks 6.496        
cufflinks 8.03        
cufflinks 6.317        
cufflinks 5.339       Low
cufflinks 5.628        
cufflinks 6.997        
cufflinks 5.037       Low
cufflinks 7.647        
cufflinks 7.084        
cufflinks 9.37       High
cufflinks 13.382       High
cufflinks 6.351        
cufflinks 9.466       High
cufflinks 5.291       Low
cufflinks 9.846       High
cufflinks 7.244        
cufflinks 7.575        
cufflinks 8.781        

0 Strain