Gene : Seita.3G397000 S. italica v2.2
Defline:  (1 of 4) PTHR10126 - TATA-BOX BINDING PROTEIN Genomic Order:  3970
Name:  ? Seita.3G397000 Secondary Identifier:  ? PAC:32713172
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G397000 0.5kb upstream 0.5kb upstream 4337 true scaffold_3: 49775347-49779683 Setaria italica
Seita.3G397000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 49775347-49775846 Setaria italica
Seita.3G397000 0.5kb downstream 0.5kb downstream 4337 true scaffold_3: 49775847-49780183 Setaria italica
Seita.3G397000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 49779684-49780183 Setaria italica
Seita.3G397000 1.0kb upstream 1.0kb upstream 4837 true scaffold_3: 49774847-49779683 Setaria italica
Seita.3G397000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 49774847-49775846 Setaria italica
Seita.3G397000 1.0kb downstream 1.0kb downstream 4837 true scaffold_3: 49775847-49780683 Setaria italica
Seita.3G397000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 49779684-49780683 Setaria italica
Seita.3G397000 2.0kb upstream 2.0kb upstream 5837 true scaffold_3: 49773847-49779683 Setaria italica
Seita.3G397000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 49773847-49775846 Setaria italica
Seita.3G397000 2.0kb downstream 2.0kb downstream 5837 true scaffold_3: 49775847-49781683 Setaria italica
Seita.3G397000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 49779684-49781683 Setaria italica
Seita.3G397000 5.0kb upstream 5.0kb upstream 8837 true scaffold_3: 49770847-49779683 Setaria italica
Seita.3G397000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 49770847-49775846 Setaria italica
Seita.3G397000 5.0kb downstream 5.0kb downstream 8837 true scaffold_3: 49775847-49784683 Setaria italica
Seita.3G397000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 49779684-49784683 Setaria italica
Seita.3G397000 10.0kb upstream 10.0kb upstream 13837 true scaffold_3: 49765847-49779683 Setaria italica
Seita.3G397000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 49765847-49775846 Setaria italica
Seita.3G397000 10.0kb downstream 10.0kb downstream 13837 true scaffold_3: 49775847-49789683 Setaria italica
Seita.3G397000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 49779684-49789683 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199665 5267 Panicoideae View MSA
124569114 5269 Grass View MSA
122046126 5273 Angiosperm View MSA
123429185 5275 Viridiplantae View MSA
121349658 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.874        
cufflinks 8.013        
cufflinks 4.519        
cufflinks 5.295        
cufflinks 3.79       Low
cufflinks 7.785        
cufflinks 5.369        
cufflinks 9.161        
cufflinks 4.338       Low
cufflinks 6.922        
cufflinks 8.903        
cufflinks 11.547       High
cufflinks 9.582        
cufflinks 4.837        
cufflinks 12.158       High
cufflinks 3.327       Low
cufflinks 14.384     High High
cufflinks 4.891        
cufflinks 3.866       Low
cufflinks 12.565       High

0 Strain