Gene : Seita.3G395700 S. italica v2.2
Defline:  (1 of 22) PTHR23155//PTHR23155:SF541 - LEUCINE-RICH REPEAT-CONTAINING PROTEIN Genomic Order:  3957
Name:  ? Seita.3G395700 Secondary Identifier:  ? PAC:32714772
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G395700 0.5kb upstream 0.5kb upstream 6048 true scaffold_3: 49681827-49687874 Setaria italica
Seita.3G395700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 49687375-49687874 Setaria italica
Seita.3G395700 0.5kb downstream 0.5kb downstream 6048 true scaffold_3: 49681327-49687374 Setaria italica
Seita.3G395700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 49681327-49681826 Setaria italica
Seita.3G395700 1.0kb upstream 1.0kb upstream 6548 true scaffold_3: 49681827-49688374 Setaria italica
Seita.3G395700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 49687375-49688374 Setaria italica
Seita.3G395700 1.0kb downstream 1.0kb downstream 6548 true scaffold_3: 49680827-49687374 Setaria italica
Seita.3G395700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 49680827-49681826 Setaria italica
Seita.3G395700 2.0kb upstream 2.0kb upstream 7548 true scaffold_3: 49681827-49689374 Setaria italica
Seita.3G395700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 49687375-49689374 Setaria italica
Seita.3G395700 2.0kb downstream 2.0kb downstream 7548 true scaffold_3: 49679827-49687374 Setaria italica
Seita.3G395700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 49679827-49681826 Setaria italica
Seita.3G395700 5.0kb upstream 5.0kb upstream 10548 true scaffold_3: 49681827-49692374 Setaria italica
Seita.3G395700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 49687375-49692374 Setaria italica
Seita.3G395700 5.0kb downstream 5.0kb downstream 10548 true scaffold_3: 49676827-49687374 Setaria italica
Seita.3G395700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 49676827-49681826 Setaria italica
Seita.3G395700 10.0kb upstream 10.0kb upstream 15548 true scaffold_3: 49681827-49697374 Setaria italica
Seita.3G395700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 49687375-49697374 Setaria italica
Seita.3G395700 10.0kb downstream 10.0kb downstream 15548 true scaffold_3: 49671827-49687374 Setaria italica
Seita.3G395700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 49671827-49681826 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199797 5267 Panicoideae View MSA
124590789 5269 Grass View MSA
122051706 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.541        
cufflinks 0.02     Low Low
cufflinks 0.064     Low  
cufflinks 0.051     Low  
cufflinks 0.015     Low Low
cufflinks 0.021     Low Low
cufflinks 0.208        
cufflinks 0.108     Low  
cufflinks 0.035     Low Low
cufflinks 0.298     Low  
cufflinks 0.228        
cufflinks 2.715       High
cufflinks 2.927       High
cufflinks 0.163        
cufflinks 3.824       High
cufflinks 0.195        
cufflinks 2.751       High
cufflinks 0.142        
cufflinks 0.189        
cufflinks 3.088       High

0 Strain