Gene : Seita.3G401400 S. italica v2.2
Defline:  (1 of 1) PTHR10668:SF83 - PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN 2 Genomic Order:  4014
Name:  ? Seita.3G401400 Secondary Identifier:  ? PAC:32713141
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G401400 0.5kb upstream 0.5kb upstream 5643 true scaffold_3: 50120425-50126067 Setaria italica
Seita.3G401400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 50125568-50126067 Setaria italica
Seita.3G401400 0.5kb downstream 0.5kb downstream 5643 true scaffold_3: 50119925-50125567 Setaria italica
Seita.3G401400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 50119925-50120424 Setaria italica
Seita.3G401400 1.0kb upstream 1.0kb upstream 6143 true scaffold_3: 50120425-50126567 Setaria italica
Seita.3G401400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 50125568-50126567 Setaria italica
Seita.3G401400 1.0kb downstream 1.0kb downstream 6143 true scaffold_3: 50119425-50125567 Setaria italica
Seita.3G401400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 50119425-50120424 Setaria italica
Seita.3G401400 2.0kb upstream 2.0kb upstream 7143 true scaffold_3: 50120425-50127567 Setaria italica
Seita.3G401400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 50125568-50127567 Setaria italica
Seita.3G401400 2.0kb downstream 2.0kb downstream 7143 true scaffold_3: 50118425-50125567 Setaria italica
Seita.3G401400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 50118425-50120424 Setaria italica
Seita.3G401400 5.0kb upstream 5.0kb upstream 10143 true scaffold_3: 50120425-50130567 Setaria italica
Seita.3G401400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 50125568-50130567 Setaria italica
Seita.3G401400 5.0kb downstream 5.0kb downstream 10143 true scaffold_3: 50115425-50125567 Setaria italica
Seita.3G401400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 50115425-50120424 Setaria italica
Seita.3G401400 10.0kb upstream 10.0kb upstream 15143 true scaffold_3: 50120425-50135567 Setaria italica
Seita.3G401400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 50125568-50135567 Setaria italica
Seita.3G401400 10.0kb downstream 10.0kb downstream 15143 true scaffold_3: 50110425-50125567 Setaria italica
Seita.3G401400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 50110425-50120424 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190923 5267 Panicoideae View MSA
124580304 5269 Grass View MSA
122043092 5273 Angiosperm View MSA
121344165 5274 Embryophyte View MSA
123379989 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.454        
cufflinks 10.451       High
cufflinks 6.871        
cufflinks 6.146        
cufflinks 6.23        
cufflinks 11.334       High
cufflinks 6.701        
cufflinks 6.948        
cufflinks 6.894        
cufflinks 8.397        
cufflinks 7.484        
cufflinks 9.81        
cufflinks 11.485       High
cufflinks 5.351       Low
cufflinks 7.964        
cufflinks 5.412       Low
cufflinks 10.527       High
cufflinks 8.778        
cufflinks 3.451       Low
cufflinks 9.448        

0 Strain