Gene : Seita.3G408300 S. italica v2.2
Defline:  (1 of 1) PTHR10543:SF37 - CAROTENOID 9,10(9',10')-CLEAVAGE DIOXYGENASE 1 Genomic Order:  4083
Name:  ? Seita.3G408300 Secondary Identifier:  ? PAC:32710670
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G408300 0.5kb upstream 0.5kb upstream 6686 true scaffold_3: 50552310-50558995 Setaria italica
Seita.3G408300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 50552310-50552809 Setaria italica
Seita.3G408300 0.5kb downstream 0.5kb downstream 6686 true scaffold_3: 50552810-50559495 Setaria italica
Seita.3G408300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 50558996-50559495 Setaria italica
Seita.3G408300 1.0kb upstream 1.0kb upstream 7186 true scaffold_3: 50551810-50558995 Setaria italica
Seita.3G408300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 50551810-50552809 Setaria italica
Seita.3G408300 1.0kb downstream 1.0kb downstream 7186 true scaffold_3: 50552810-50559995 Setaria italica
Seita.3G408300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 50558996-50559995 Setaria italica
Seita.3G408300 2.0kb upstream 2.0kb upstream 8186 true scaffold_3: 50550810-50558995 Setaria italica
Seita.3G408300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 50550810-50552809 Setaria italica
Seita.3G408300 2.0kb downstream 2.0kb downstream 8186 true scaffold_3: 50552810-50560995 Setaria italica
Seita.3G408300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 50558996-50560995 Setaria italica
Seita.3G408300 5.0kb upstream 5.0kb upstream 11186 true scaffold_3: 50547810-50558995 Setaria italica
Seita.3G408300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 50547810-50552809 Setaria italica
Seita.3G408300 5.0kb downstream 5.0kb downstream 11186 true scaffold_3: 50552810-50563995 Setaria italica
Seita.3G408300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 50558996-50563995 Setaria italica
Seita.3G408300 10.0kb upstream 10.0kb upstream 16186 true scaffold_3: 50542810-50558995 Setaria italica
Seita.3G408300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 50542810-50552809 Setaria italica
Seita.3G408300 10.0kb downstream 10.0kb downstream 16186 true scaffold_3: 50552810-50568995 Setaria italica
Seita.3G408300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 50558996-50568995 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177138 5267 Panicoideae View MSA
124583262 5269 Grass View MSA
122045403 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.955        
cufflinks 8.234        
cufflinks 40.84     High High
cufflinks 35.6     High High
cufflinks 28.801     High  
cufflinks 7.376        
cufflinks 17.631     High  
cufflinks 24.063     High  
cufflinks 14.871     High  
cufflinks 2.178       Low
cufflinks 2.234       Low
cufflinks 2.511       Low
cufflinks 5.204        
cufflinks 34.137     High High
cufflinks 5.611        
cufflinks 39.159     High High
cufflinks 3.736        
cufflinks 10.963        
cufflinks 51.549     High High
cufflinks 3.216       Low

0 Strain