Gene : Seita.3G407000 S. italica v2.2
Defline:  (1 of 2) PTHR12418:SF33 - 1,4-DIHYDROXY-2-NAPHTHOYL-COA THIOESTERASE 1 Genomic Order:  4070
Name:  ? Seita.3G407000 Secondary Identifier:  ? PAC:32712179
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5837 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G407000 0.5kb upstream 0.5kb upstream 3410 true scaffold_3: 50508153-50511562 Setaria italica
Seita.3G407000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 50511063-50511562 Setaria italica
Seita.3G407000 0.5kb downstream 0.5kb downstream 3410 true scaffold_3: 50507653-50511062 Setaria italica
Seita.3G407000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 50507653-50508152 Setaria italica
Seita.3G407000 1.0kb upstream 1.0kb upstream 3910 true scaffold_3: 50508153-50512062 Setaria italica
Seita.3G407000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 50511063-50512062 Setaria italica
Seita.3G407000 1.0kb downstream 1.0kb downstream 3910 true scaffold_3: 50507153-50511062 Setaria italica
Seita.3G407000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 50507153-50508152 Setaria italica
Seita.3G407000 2.0kb upstream 2.0kb upstream 4910 true scaffold_3: 50508153-50513062 Setaria italica
Seita.3G407000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 50511063-50513062 Setaria italica
Seita.3G407000 2.0kb downstream 2.0kb downstream 4910 true scaffold_3: 50506153-50511062 Setaria italica
Seita.3G407000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 50506153-50508152 Setaria italica
Seita.3G407000 5.0kb upstream 5.0kb upstream 7910 true scaffold_3: 50508153-50516062 Setaria italica
Seita.3G407000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 50511063-50516062 Setaria italica
Seita.3G407000 5.0kb downstream 5.0kb downstream 7910 true scaffold_3: 50503153-50511062 Setaria italica
Seita.3G407000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 50503153-50508152 Setaria italica
Seita.3G407000 10.0kb upstream 10.0kb upstream 12910 true scaffold_3: 50508153-50521062 Setaria italica
Seita.3G407000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 50511063-50521062 Setaria italica
Seita.3G407000 10.0kb downstream 10.0kb downstream 12910 true scaffold_3: 50498153-50511062 Setaria italica
Seita.3G407000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 50498153-50508152 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179692 5267 Panicoideae View MSA
124584994 5269 Grass View MSA
122042191 5273 Angiosperm View MSA
121348407 5274 Embryophyte View MSA
123380851 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.247       Low
cufflinks 4.562        
cufflinks 4.677        
cufflinks 6.361       High
cufflinks 4.292        
cufflinks 4.819        
cufflinks 2.909        
cufflinks 4.818        
cufflinks 2.88        
cufflinks 6.5       High
cufflinks 2.981        
cufflinks 2.782        
cufflinks 3.186        
cufflinks 5.984       High
cufflinks 4.869        
cufflinks 2.158       Low
cufflinks 2.412        
cufflinks 1.387       Low
cufflinks 6.268       High
cufflinks 3.636        

0 Strain