Gene : Seita.4G001500 S. italica v2.2
Defline:  (1 of 1) PTHR10799:SF620 - DEFECTIVE CHORION-1 PROTEIN, FC177 ISOFORM Genomic Order:  15
Name:  ? Seita.4G001500 Secondary Identifier:  ? PAC:32706337
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G001500 0.5kb upstream 0.5kb upstream 16413 true scaffold_4: 149537-165949 Setaria italica
Seita.4G001500 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 149537-150036 Setaria italica
Seita.4G001500 0.5kb downstream 0.5kb downstream 16413 true scaffold_4: 150037-166449 Setaria italica
Seita.4G001500 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 165950-166449 Setaria italica
Seita.4G001500 1.0kb upstream 1.0kb upstream 16913 true scaffold_4: 149037-165949 Setaria italica
Seita.4G001500 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 149037-150036 Setaria italica
Seita.4G001500 1.0kb downstream 1.0kb downstream 16913 true scaffold_4: 150037-166949 Setaria italica
Seita.4G001500 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 165950-166949 Setaria italica
Seita.4G001500 2.0kb upstream 2.0kb upstream 17913 true scaffold_4: 148037-165949 Setaria italica
Seita.4G001500 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 148037-150036 Setaria italica
Seita.4G001500 2.0kb downstream 2.0kb downstream 17913 true scaffold_4: 150037-167949 Setaria italica
Seita.4G001500 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 165950-167949 Setaria italica
Seita.4G001500 5.0kb upstream 5.0kb upstream 20913 true scaffold_4: 145037-165949 Setaria italica
Seita.4G001500 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 145037-150036 Setaria italica
Seita.4G001500 5.0kb downstream 5.0kb downstream 20913 true scaffold_4: 150037-170949 Setaria italica
Seita.4G001500 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 165950-170949 Setaria italica
Seita.4G001500 10.0kb upstream 10.0kb upstream 25913 true scaffold_4: 140037-165949 Setaria italica
Seita.4G001500 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 140037-150036 Setaria italica
Seita.4G001500 10.0kb downstream 10.0kb downstream 25913 true scaffold_4: 150037-175949 Setaria italica
Seita.4G001500 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 165950-175949 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188164 5267 Panicoideae View MSA
124586739 5269 Grass View MSA
122043248 5273 Angiosperm View MSA
121351152 5274 Embryophyte View MSA
123382029 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.555     High High
cufflinks 10.012        
cufflinks 13.051     High High
cufflinks 10.962     High  
cufflinks 8.269        
cufflinks 10.14        
cufflinks 8.445        
cufflinks 5.091       Low
cufflinks 6.136        
cufflinks 5.004       Low
cufflinks 9.726        
cufflinks 6.875        
cufflinks 7.607        
cufflinks 8.014        
cufflinks 8.092        
cufflinks 12.873     High High
cufflinks 5.6       Low
cufflinks 20.081     High High
cufflinks 6.671        
cufflinks 5.889       Low

0 Strain