Gene : Seita.4G005500 S. italica v2.2
Defline:  (1 of 63) PF00892 - EamA-like transporter family (EamA) Genomic Order:  55
Name:  ? Seita.4G005500 Secondary Identifier:  ? PAC:32706649
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G005500 0.5kb upstream 0.5kb upstream 4242 true scaffold_4: 383370-387611 Setaria italica
Seita.4G005500 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 383370-383869 Setaria italica
Seita.4G005500 0.5kb downstream 0.5kb downstream 4242 true scaffold_4: 383870-388111 Setaria italica
Seita.4G005500 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 387612-388111 Setaria italica
Seita.4G005500 1.0kb upstream 1.0kb upstream 4742 true scaffold_4: 382870-387611 Setaria italica
Seita.4G005500 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 382870-383869 Setaria italica
Seita.4G005500 1.0kb downstream 1.0kb downstream 4742 true scaffold_4: 383870-388611 Setaria italica
Seita.4G005500 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 387612-388611 Setaria italica
Seita.4G005500 2.0kb upstream 2.0kb upstream 5742 true scaffold_4: 381870-387611 Setaria italica
Seita.4G005500 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 381870-383869 Setaria italica
Seita.4G005500 2.0kb downstream 2.0kb downstream 5742 true scaffold_4: 383870-389611 Setaria italica
Seita.4G005500 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 387612-389611 Setaria italica
Seita.4G005500 5.0kb upstream 5.0kb upstream 8742 true scaffold_4: 378870-387611 Setaria italica
Seita.4G005500 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 378870-383869 Setaria italica
Seita.4G005500 5.0kb downstream 5.0kb downstream 8742 true scaffold_4: 383870-392611 Setaria italica
Seita.4G005500 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 387612-392611 Setaria italica
Seita.4G005500 10.0kb upstream 10.0kb upstream 13742 true scaffold_4: 373870-387611 Setaria italica
Seita.4G005500 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 373870-383869 Setaria italica
Seita.4G005500 10.0kb downstream 10.0kb downstream 13742 true scaffold_4: 383870-397611 Setaria italica
Seita.4G005500 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 387612-397611 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026670 5273 Angiosperm View MSA
122196245 5267 Panicoideae View MSA
124586908 5269 Grass View MSA
121296466 5274 Embryophyte View MSA
123334621 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.832       High
cufflinks 0.134        
cufflinks 0.179        
cufflinks 0.16        
cufflinks 1.017       High
cufflinks 0.03     Low  
cufflinks 0.138        
cufflinks 0.106     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.027     Low  
cufflinks 0.013     Low Low
cufflinks 0.018     Low Low
cufflinks 0.066     Low  
cufflinks 0.052     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.074     Low  
cufflinks 0.031     Low  

0 Strain