Gene : Seita.3G345000 S. italica v2.2
Defline:  (1 of 1) PTHR15657:SF1 - THYROID TRANSCRIPTION FACTOR 1-ASSOCIATED PROTEIN 26 Genomic Order:  3450
Name:  ? Seita.3G345000 Secondary Identifier:  ? PAC:32711751
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G345000 0.5kb upstream 0.5kb upstream 2596 true scaffold_3: 44424804-44427399 Setaria italica
Seita.3G345000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 44424804-44425303 Setaria italica
Seita.3G345000 0.5kb downstream 0.5kb downstream 2596 true scaffold_3: 44425304-44427899 Setaria italica
Seita.3G345000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 44427400-44427899 Setaria italica
Seita.3G345000 1.0kb upstream 1.0kb upstream 3096 true scaffold_3: 44424304-44427399 Setaria italica
Seita.3G345000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 44424304-44425303 Setaria italica
Seita.3G345000 1.0kb downstream 1.0kb downstream 3096 true scaffold_3: 44425304-44428399 Setaria italica
Seita.3G345000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 44427400-44428399 Setaria italica
Seita.3G345000 2.0kb upstream 2.0kb upstream 4096 true scaffold_3: 44423304-44427399 Setaria italica
Seita.3G345000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 44423304-44425303 Setaria italica
Seita.3G345000 2.0kb downstream 2.0kb downstream 4096 true scaffold_3: 44425304-44429399 Setaria italica
Seita.3G345000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 44427400-44429399 Setaria italica
Seita.3G345000 5.0kb upstream 5.0kb upstream 7096 true scaffold_3: 44420304-44427399 Setaria italica
Seita.3G345000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 44420304-44425303 Setaria italica
Seita.3G345000 5.0kb downstream 5.0kb downstream 7096 true scaffold_3: 44425304-44432399 Setaria italica
Seita.3G345000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 44427400-44432399 Setaria italica
Seita.3G345000 10.0kb upstream 10.0kb upstream 12096 true scaffold_3: 44415304-44427399 Setaria italica
Seita.3G345000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 44415304-44425303 Setaria italica
Seita.3G345000 10.0kb downstream 10.0kb downstream 12096 true scaffold_3: 44425304-44437399 Setaria italica
Seita.3G345000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 44427400-44437399 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190341 5267 Panicoideae View MSA
124583736 5269 Grass View MSA
122042448 5273 Angiosperm View MSA
121343985 5274 Embryophyte View MSA
123426667 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.468     High  
cufflinks 23.479     High High
cufflinks 12.126     High Low
cufflinks 13.025     High Low
cufflinks 13.885     High  
cufflinks 24.575     High High
cufflinks 17.065     High  
cufflinks 19.005     High  
cufflinks 18.961     High  
cufflinks 13.535        
cufflinks 13.205        
cufflinks 16.747     High  
cufflinks 14.065     High  
cufflinks 14.159     High  
cufflinks 16.899     High  
cufflinks 14.7     High  
cufflinks 18.918     High  
cufflinks 14.857     High  
cufflinks 13.228     High  
cufflinks 15.594     High  

0 Strain