Gene : Seita.3G353600 S. italica v2.2
Defline:  (1 of 1) PF15811 - Small VCP/p97-interacting protein (SVIP) Genomic Order:  3536
Name:  ? Seita.3G353600 Secondary Identifier:  ? PAC:32712113
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G353600 0.5kb upstream 0.5kb upstream 2998 true scaffold_3: 45375915-45378912 Setaria italica
Seita.3G353600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 45375915-45376414 Setaria italica
Seita.3G353600 0.5kb downstream 0.5kb downstream 2998 true scaffold_3: 45376415-45379412 Setaria italica
Seita.3G353600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 45378913-45379412 Setaria italica
Seita.3G353600 1.0kb upstream 1.0kb upstream 3498 true scaffold_3: 45375415-45378912 Setaria italica
Seita.3G353600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 45375415-45376414 Setaria italica
Seita.3G353600 1.0kb downstream 1.0kb downstream 3498 true scaffold_3: 45376415-45379912 Setaria italica
Seita.3G353600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 45378913-45379912 Setaria italica
Seita.3G353600 2.0kb upstream 2.0kb upstream 4498 true scaffold_3: 45374415-45378912 Setaria italica
Seita.3G353600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 45374415-45376414 Setaria italica
Seita.3G353600 2.0kb downstream 2.0kb downstream 4498 true scaffold_3: 45376415-45380912 Setaria italica
Seita.3G353600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 45378913-45380912 Setaria italica
Seita.3G353600 5.0kb upstream 5.0kb upstream 7498 true scaffold_3: 45371415-45378912 Setaria italica
Seita.3G353600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 45371415-45376414 Setaria italica
Seita.3G353600 5.0kb downstream 5.0kb downstream 7498 true scaffold_3: 45376415-45383912 Setaria italica
Seita.3G353600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 45378913-45383912 Setaria italica
Seita.3G353600 10.0kb upstream 10.0kb upstream 12498 true scaffold_3: 45366415-45378912 Setaria italica
Seita.3G353600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 45366415-45376414 Setaria italica
Seita.3G353600 10.0kb downstream 10.0kb downstream 12498 true scaffold_3: 45376415-45388912 Setaria italica
Seita.3G353600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 45378913-45388912 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571797 5269 Grass View MSA
122183078 5267 Panicoideae View MSA
122050042 5273 Angiosperm View MSA
121311703 5274 Embryophyte View MSA
123348966 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.449        
cufflinks 4.577        
cufflinks 2.286       Low
cufflinks 3.48        
cufflinks 7.041        
cufflinks 5.536        
cufflinks 4.714        
cufflinks 4.245        
cufflinks 9.186       High
cufflinks 5.652        
cufflinks 3.548        
cufflinks 10.044       High
cufflinks 6.864        
cufflinks 4.968        
cufflinks 6.154        
cufflinks 3.516        
cufflinks 10.396       High
cufflinks 2.446       Low
cufflinks 3.517        
cufflinks 11.626       High

0 Strain