Gene : Seita.3G362300 S. italica v2.2
Defline:  (1 of 1) KOG1863 - Ubiquitin carboxyl-terminal hydrolase Genomic Order:  3623
Name:  ? Seita.3G362300 Secondary Identifier:  ? PAC:32712494
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G362300 0.5kb upstream 0.5kb upstream 12696 true scaffold_3: 46557309-46570004 Setaria italica
Seita.3G362300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 46569505-46570004 Setaria italica
Seita.3G362300 0.5kb downstream 0.5kb downstream 12696 true scaffold_3: 46556809-46569504 Setaria italica
Seita.3G362300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 46556809-46557308 Setaria italica
Seita.3G362300 1.0kb upstream 1.0kb upstream 13196 true scaffold_3: 46557309-46570504 Setaria italica
Seita.3G362300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 46569505-46570504 Setaria italica
Seita.3G362300 1.0kb downstream 1.0kb downstream 13196 true scaffold_3: 46556309-46569504 Setaria italica
Seita.3G362300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 46556309-46557308 Setaria italica
Seita.3G362300 2.0kb upstream 2.0kb upstream 14196 true scaffold_3: 46557309-46571504 Setaria italica
Seita.3G362300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 46569505-46571504 Setaria italica
Seita.3G362300 2.0kb downstream 2.0kb downstream 14196 true scaffold_3: 46555309-46569504 Setaria italica
Seita.3G362300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 46555309-46557308 Setaria italica
Seita.3G362300 5.0kb upstream 5.0kb upstream 17196 true scaffold_3: 46557309-46574504 Setaria italica
Seita.3G362300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 46569505-46574504 Setaria italica
Seita.3G362300 5.0kb downstream 5.0kb downstream 17196 true scaffold_3: 46552309-46569504 Setaria italica
Seita.3G362300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 46552309-46557308 Setaria italica
Seita.3G362300 10.0kb upstream 10.0kb upstream 22196 true scaffold_3: 46557309-46579504 Setaria italica
Seita.3G362300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 46569505-46579504 Setaria italica
Seita.3G362300 10.0kb downstream 10.0kb downstream 22196 true scaffold_3: 46547309-46569504 Setaria italica
Seita.3G362300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 46547309-46557308 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199963 5267 Panicoideae View MSA
124581112 5269 Grass View MSA
122043849 5273 Angiosperm View MSA
121347383 5274 Embryophyte View MSA
123427406 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.265     High High
cufflinks 14.489     High High
cufflinks 10.64        
cufflinks 8.436        
cufflinks 7.528       Low
cufflinks 14.948     High High
cufflinks 11.649        
cufflinks 8.992        
cufflinks 8.097       Low
cufflinks 7.361       Low
cufflinks 13.914     High High
cufflinks 10.393        
cufflinks 10.385        
cufflinks 8.586        
cufflinks 12.909        
cufflinks 12.509     High  
cufflinks 10.035        
cufflinks 11.964     High  
cufflinks 7.399       Low
cufflinks 10.746        

0 Strain