Gene : Seita.3G375000 S. italica v2.2
Defline:  (1 of 1) PF08320 - PIG-X / PBN1 (PIG-X) Genomic Order:  3750
Name:  ? Seita.3G375000 Secondary Identifier:  ? PAC:32711779
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G375000 0.5kb upstream 0.5kb upstream 3507 true scaffold_3: 47799803-47803309 Setaria italica
Seita.3G375000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 47802810-47803309 Setaria italica
Seita.3G375000 0.5kb downstream 0.5kb downstream 3507 true scaffold_3: 47799303-47802809 Setaria italica
Seita.3G375000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 47799303-47799802 Setaria italica
Seita.3G375000 1.0kb upstream 1.0kb upstream 4007 true scaffold_3: 47799803-47803809 Setaria italica
Seita.3G375000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 47802810-47803809 Setaria italica
Seita.3G375000 1.0kb downstream 1.0kb downstream 4007 true scaffold_3: 47798803-47802809 Setaria italica
Seita.3G375000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 47798803-47799802 Setaria italica
Seita.3G375000 2.0kb upstream 2.0kb upstream 5007 true scaffold_3: 47799803-47804809 Setaria italica
Seita.3G375000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 47802810-47804809 Setaria italica
Seita.3G375000 2.0kb downstream 2.0kb downstream 5007 true scaffold_3: 47797803-47802809 Setaria italica
Seita.3G375000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 47797803-47799802 Setaria italica
Seita.3G375000 5.0kb upstream 5.0kb upstream 8007 true scaffold_3: 47799803-47807809 Setaria italica
Seita.3G375000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 47802810-47807809 Setaria italica
Seita.3G375000 5.0kb downstream 5.0kb downstream 8007 true scaffold_3: 47794803-47802809 Setaria italica
Seita.3G375000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 47794803-47799802 Setaria italica
Seita.3G375000 10.0kb upstream 10.0kb upstream 13007 true scaffold_3: 47799803-47812809 Setaria italica
Seita.3G375000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 47802810-47812809 Setaria italica
Seita.3G375000 10.0kb downstream 10.0kb downstream 13007 true scaffold_3: 47789803-47802809 Setaria italica
Seita.3G375000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 47789803-47799802 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181446 5267 Panicoideae View MSA
124570985 5269 Grass View MSA
122050231 5273 Angiosperm View MSA
121311811 5274 Embryophyte View MSA
123349053 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.474       High
cufflinks 0.458       High
cufflinks 0.338        
cufflinks 0.225       Low
cufflinks 0.217       Low
cufflinks 0.461       High
cufflinks 0.305        
cufflinks 0.408        
cufflinks 0.266       Low
cufflinks 0.521       High
cufflinks 0.352        
cufflinks 0.382        
cufflinks 0.355        
cufflinks 0.28        
cufflinks 0.438        
cufflinks 0.341        
cufflinks 0.424        
cufflinks 0.285        
cufflinks 0.226       Low
cufflinks 0.439        

0 Strain