Gene : Seita.4G093800 S. italica v2.2
Defline:  (1 of 1) PTHR23315:SF66 - CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 1 Genomic Order:  938
Name:  ? Seita.4G093800 Secondary Identifier:  ? PAC:32708113
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G093800 0.5kb upstream 0.5kb upstream 11670 true scaffold_4: 7770995-7782664 Setaria italica
Seita.4G093800 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 7782165-7782664 Setaria italica
Seita.4G093800 0.5kb downstream 0.5kb downstream 11670 true scaffold_4: 7770495-7782164 Setaria italica
Seita.4G093800 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 7770495-7770994 Setaria italica
Seita.4G093800 1.0kb upstream 1.0kb upstream 12170 true scaffold_4: 7770995-7783164 Setaria italica
Seita.4G093800 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 7782165-7783164 Setaria italica
Seita.4G093800 1.0kb downstream 1.0kb downstream 12170 true scaffold_4: 7769995-7782164 Setaria italica
Seita.4G093800 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 7769995-7770994 Setaria italica
Seita.4G093800 2.0kb upstream 2.0kb upstream 13170 true scaffold_4: 7770995-7784164 Setaria italica
Seita.4G093800 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 7782165-7784164 Setaria italica
Seita.4G093800 2.0kb downstream 2.0kb downstream 13170 true scaffold_4: 7768995-7782164 Setaria italica
Seita.4G093800 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 7768995-7770994 Setaria italica
Seita.4G093800 5.0kb upstream 5.0kb upstream 16170 true scaffold_4: 7770995-7787164 Setaria italica
Seita.4G093800 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 7782165-7787164 Setaria italica
Seita.4G093800 5.0kb downstream 5.0kb downstream 16170 true scaffold_4: 7765995-7782164 Setaria italica
Seita.4G093800 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 7765995-7770994 Setaria italica
Seita.4G093800 10.0kb upstream 10.0kb upstream 21170 true scaffold_4: 7770995-7792164 Setaria italica
Seita.4G093800 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 7782165-7792164 Setaria italica
Seita.4G093800 10.0kb downstream 10.0kb downstream 21170 true scaffold_4: 7760995-7782164 Setaria italica
Seita.4G093800 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 7760995-7770994 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122048106 5273 Angiosperm View MSA
122190334 5267 Panicoideae View MSA
124581701 5269 Grass View MSA
121347002 5274 Embryophyte View MSA
123380478 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 76.008     High  
cufflinks 82.65     High High
cufflinks 15.657     High Low
cufflinks 13.353     High Low
cufflinks 28.324     High  
cufflinks 80.127     High High
cufflinks 81.143     High High
cufflinks 36.114     High  
cufflinks 61.082     High  
cufflinks 34.144     High  
cufflinks 112.116     High High
cufflinks 26.48     High  
cufflinks 69.28     High  
cufflinks 21.8     High  
cufflinks 78.616     High High
cufflinks 44.867     High  
cufflinks 30.216     High  
cufflinks 23.137     High  
cufflinks 15.885     High Low
cufflinks 55.923     High  

0 Strain