Gene : Seita.4G092100 S. italica v2.2
Defline:  (1 of 1) PTHR10788//PTHR10788:SF23 - TREHALOSE-6-PHOSPHATE SYNTHASE Genomic Order:  921
Name:  ? Seita.4G092100 Secondary Identifier:  ? PAC:32708880
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G092100 0.5kb upstream 0.5kb upstream 3511 true scaffold_4: 7638109-7641619 Setaria italica
Seita.4G092100 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 7641120-7641619 Setaria italica
Seita.4G092100 0.5kb downstream 0.5kb downstream 3511 true scaffold_4: 7637609-7641119 Setaria italica
Seita.4G092100 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 7637609-7638108 Setaria italica
Seita.4G092100 1.0kb upstream 1.0kb upstream 4011 true scaffold_4: 7638109-7642119 Setaria italica
Seita.4G092100 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 7641120-7642119 Setaria italica
Seita.4G092100 1.0kb downstream 1.0kb downstream 4011 true scaffold_4: 7637109-7641119 Setaria italica
Seita.4G092100 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 7637109-7638108 Setaria italica
Seita.4G092100 2.0kb upstream 2.0kb upstream 5011 true scaffold_4: 7638109-7643119 Setaria italica
Seita.4G092100 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 7641120-7643119 Setaria italica
Seita.4G092100 2.0kb downstream 2.0kb downstream 5011 true scaffold_4: 7636109-7641119 Setaria italica
Seita.4G092100 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 7636109-7638108 Setaria italica
Seita.4G092100 5.0kb upstream 5.0kb upstream 8011 true scaffold_4: 7638109-7646119 Setaria italica
Seita.4G092100 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 7641120-7646119 Setaria italica
Seita.4G092100 5.0kb downstream 5.0kb downstream 8011 true scaffold_4: 7633109-7641119 Setaria italica
Seita.4G092100 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 7633109-7638108 Setaria italica
Seita.4G092100 10.0kb upstream 10.0kb upstream 13011 true scaffold_4: 7638109-7651119 Setaria italica
Seita.4G092100 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 7641120-7651119 Setaria italica
Seita.4G092100 10.0kb downstream 10.0kb downstream 13011 true scaffold_4: 7628109-7641119 Setaria italica
Seita.4G092100 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 7628109-7638108 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186693 5267 Panicoideae View MSA
124582954 5269 Grass View MSA
122048868 5273 Angiosperm View MSA
121311146 5274 Embryophyte View MSA
123427869 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.689        
cufflinks 2.151        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.46        
cufflinks 0.059     Low Low
cufflinks 0.153        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.603        
cufflinks 0.387        
cufflinks 0.131        
cufflinks 0.896        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 7.528       High
cufflinks 0.178        
cufflinks 3.181       High
cufflinks 0.075     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.675        

0 Strain