Gene : Seita.4G017900 S. italica v2.2
Defline:  (1 of 1) PTHR21183 - RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATED Genomic Order:  179
Name:  ? Seita.4G017900 Secondary Identifier:  ? PAC:32707054
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G017900 0.5kb upstream 0.5kb upstream 3121 true scaffold_4: 1183252-1186372 Setaria italica
Seita.4G017900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 1183252-1183751 Setaria italica
Seita.4G017900 0.5kb downstream 0.5kb downstream 3121 true scaffold_4: 1183752-1186872 Setaria italica
Seita.4G017900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 1186373-1186872 Setaria italica
Seita.4G017900 1.0kb upstream 1.0kb upstream 3621 true scaffold_4: 1182752-1186372 Setaria italica
Seita.4G017900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 1182752-1183751 Setaria italica
Seita.4G017900 1.0kb downstream 1.0kb downstream 3621 true scaffold_4: 1183752-1187372 Setaria italica
Seita.4G017900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 1186373-1187372 Setaria italica
Seita.4G017900 2.0kb upstream 2.0kb upstream 4621 true scaffold_4: 1181752-1186372 Setaria italica
Seita.4G017900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 1181752-1183751 Setaria italica
Seita.4G017900 2.0kb downstream 2.0kb downstream 4621 true scaffold_4: 1183752-1188372 Setaria italica
Seita.4G017900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 1186373-1188372 Setaria italica
Seita.4G017900 5.0kb upstream 5.0kb upstream 7621 true scaffold_4: 1178752-1186372 Setaria italica
Seita.4G017900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 1178752-1183751 Setaria italica
Seita.4G017900 5.0kb downstream 5.0kb downstream 7621 true scaffold_4: 1183752-1191372 Setaria italica
Seita.4G017900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 1186373-1191372 Setaria italica
Seita.4G017900 10.0kb upstream 10.0kb upstream 12621 true scaffold_4: 1173752-1186372 Setaria italica
Seita.4G017900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 1173752-1183751 Setaria italica
Seita.4G017900 10.0kb downstream 10.0kb downstream 12621 true scaffold_4: 1183752-1196372 Setaria italica
Seita.4G017900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 1186373-1196372 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189252 5267 Panicoideae View MSA
124572551 5269 Grass View MSA
122044209 5273 Angiosperm View MSA
121343803 5274 Embryophyte View MSA
123425806 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.596        
cufflinks 3.044        
cufflinks 1.263        
cufflinks 0.811       Low
cufflinks 0.771       Low
cufflinks 3.323       High
cufflinks 1.194        
cufflinks 3.961       High
cufflinks 1.835        
cufflinks 4.416       High
cufflinks 1.739        
cufflinks 2.624        
cufflinks 1.845        
cufflinks 2.297        
cufflinks 2.502        
cufflinks 0.865       Low
cufflinks 3.676       High
cufflinks 1.049       Low
cufflinks 0.95       Low
cufflinks 3.111        

0 Strain