Gene : Seita.4G022100 S. italica v2.2
Defline:  (1 of 3) 2.1.1.11 - Magnesium protoporphyrin IX methyltransferase / S-adenosylmethioninemagnesium protoporphyrin methyltransferase Genomic Order:  221
Name:  ? Seita.4G022100 Secondary Identifier:  ? PAC:32708078
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CHLOROPHYLL-SYN Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G022100 0.5kb upstream 0.5kb upstream 1487 true scaffold_4: 1464159-1465645 Setaria italica
Seita.4G022100 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 1465146-1465645 Setaria italica
Seita.4G022100 0.5kb downstream 0.5kb downstream 1487 true scaffold_4: 1463659-1465145 Setaria italica
Seita.4G022100 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 1463659-1464158 Setaria italica
Seita.4G022100 1.0kb upstream 1.0kb upstream 1987 true scaffold_4: 1464159-1466145 Setaria italica
Seita.4G022100 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 1465146-1466145 Setaria italica
Seita.4G022100 1.0kb downstream 1.0kb downstream 1987 true scaffold_4: 1463159-1465145 Setaria italica
Seita.4G022100 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 1463159-1464158 Setaria italica
Seita.4G022100 2.0kb upstream 2.0kb upstream 2987 true scaffold_4: 1464159-1467145 Setaria italica
Seita.4G022100 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 1465146-1467145 Setaria italica
Seita.4G022100 2.0kb downstream 2.0kb downstream 2987 true scaffold_4: 1462159-1465145 Setaria italica
Seita.4G022100 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 1462159-1464158 Setaria italica
Seita.4G022100 5.0kb upstream 5.0kb upstream 5987 true scaffold_4: 1464159-1470145 Setaria italica
Seita.4G022100 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 1465146-1470145 Setaria italica
Seita.4G022100 5.0kb downstream 5.0kb downstream 5987 true scaffold_4: 1459159-1465145 Setaria italica
Seita.4G022100 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 1459159-1464158 Setaria italica
Seita.4G022100 10.0kb upstream 10.0kb upstream 10987 true scaffold_4: 1464159-1475145 Setaria italica
Seita.4G022100 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 1465146-1475145 Setaria italica
Seita.4G022100 10.0kb downstream 10.0kb downstream 10987 true scaffold_4: 1454159-1465145 Setaria italica
Seita.4G022100 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 1454159-1464158 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182295 5267 Panicoideae View MSA
124577084 5269 Grass View MSA
122043100 5273 Angiosperm View MSA
121345477 5274 Embryophyte View MSA
123424951 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.888        
cufflinks 3.278        
cufflinks 1.4        
cufflinks 1.482        
cufflinks 6.132        
cufflinks 3.764        
cufflinks 8.697        
cufflinks 11.516       High
cufflinks 15.094     High High
cufflinks 5.812        
cufflinks 1.203        
cufflinks 0.049     Low Low
cufflinks 0.068     Low Low
cufflinks 6.136        
cufflinks 0.033     Low Low
cufflinks 5.556        
cufflinks 0.05     Low Low
cufflinks 0.529        
cufflinks 5.389        
cufflinks 0.017     Low Low

0 Strain