Gene : Seita.4G029400 S. italica v2.2
Defline:  (1 of 1) PTHR22769:SF7 - PEROXISOMAL NADH PYROPHOSPHATASE NUDT12 Genomic Order:  294
Name:  ? Seita.4G029400 Secondary Identifier:  ? PAC:32709615
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5381 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G029400 0.5kb upstream 0.5kb upstream 4605 true scaffold_4: 1905108-1909712 Setaria italica
Seita.4G029400 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 1905108-1905607 Setaria italica
Seita.4G029400 0.5kb downstream 0.5kb downstream 4605 true scaffold_4: 1905608-1910212 Setaria italica
Seita.4G029400 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 1909713-1910212 Setaria italica
Seita.4G029400 1.0kb upstream 1.0kb upstream 5105 true scaffold_4: 1904608-1909712 Setaria italica
Seita.4G029400 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 1904608-1905607 Setaria italica
Seita.4G029400 1.0kb downstream 1.0kb downstream 5105 true scaffold_4: 1905608-1910712 Setaria italica
Seita.4G029400 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 1909713-1910712 Setaria italica
Seita.4G029400 2.0kb upstream 2.0kb upstream 6105 true scaffold_4: 1903608-1909712 Setaria italica
Seita.4G029400 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 1903608-1905607 Setaria italica
Seita.4G029400 2.0kb downstream 2.0kb downstream 6105 true scaffold_4: 1905608-1911712 Setaria italica
Seita.4G029400 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 1909713-1911712 Setaria italica
Seita.4G029400 5.0kb upstream 5.0kb upstream 9105 true scaffold_4: 1900608-1909712 Setaria italica
Seita.4G029400 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 1900608-1905607 Setaria italica
Seita.4G029400 5.0kb downstream 5.0kb downstream 9105 true scaffold_4: 1905608-1914712 Setaria italica
Seita.4G029400 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 1909713-1914712 Setaria italica
Seita.4G029400 10.0kb upstream 10.0kb upstream 14105 true scaffold_4: 1895608-1909712 Setaria italica
Seita.4G029400 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 1895608-1905607 Setaria italica
Seita.4G029400 10.0kb downstream 10.0kb downstream 14105 true scaffold_4: 1905608-1919712 Setaria italica
Seita.4G029400 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 1909713-1919712 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175183 5267 Panicoideae View MSA
124569512 5269 Grass View MSA
122041659 5273 Angiosperm View MSA
121345450 5274 Embryophyte View MSA
123427123 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.909        
cufflinks 7.969        
cufflinks 8.017        
cufflinks 6.502        
cufflinks 7.717        
cufflinks 8.419        
cufflinks 8.769        
cufflinks 9.804        
cufflinks 10.713       High
cufflinks 8.141        
cufflinks 7.257        
cufflinks 7.046        
cufflinks 9.853        
cufflinks 10.483       High
cufflinks 8.61        
cufflinks 6.135        
cufflinks 7.647        
cufflinks 3.001       Low
cufflinks 7.869        
cufflinks 9.108        

0 Strain