Gene : Seita.4G040100 S. italica v2.2
Defline:  (1 of 1) PTHR31384:SF21 - AUXIN RESPONSE FACTOR 19-RELATED Genomic Order:  401
Name:  ? Seita.4G040100 Secondary Identifier:  ? PAC:32706404
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G040100 0.5kb upstream 0.5kb upstream 7324 true scaffold_4: 2680871-2688194 Setaria italica
Seita.4G040100 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 2687695-2688194 Setaria italica
Seita.4G040100 0.5kb downstream 0.5kb downstream 7324 true scaffold_4: 2680371-2687694 Setaria italica
Seita.4G040100 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 2680371-2680870 Setaria italica
Seita.4G040100 1.0kb upstream 1.0kb upstream 7824 true scaffold_4: 2680871-2688694 Setaria italica
Seita.4G040100 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 2687695-2688694 Setaria italica
Seita.4G040100 1.0kb downstream 1.0kb downstream 7824 true scaffold_4: 2679871-2687694 Setaria italica
Seita.4G040100 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 2679871-2680870 Setaria italica
Seita.4G040100 2.0kb upstream 2.0kb upstream 8824 true scaffold_4: 2680871-2689694 Setaria italica
Seita.4G040100 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 2687695-2689694 Setaria italica
Seita.4G040100 2.0kb downstream 2.0kb downstream 8824 true scaffold_4: 2678871-2687694 Setaria italica
Seita.4G040100 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 2678871-2680870 Setaria italica
Seita.4G040100 5.0kb upstream 5.0kb upstream 11824 true scaffold_4: 2680871-2692694 Setaria italica
Seita.4G040100 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 2687695-2692694 Setaria italica
Seita.4G040100 5.0kb downstream 5.0kb downstream 11824 true scaffold_4: 2675871-2687694 Setaria italica
Seita.4G040100 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 2675871-2680870 Setaria italica
Seita.4G040100 10.0kb upstream 10.0kb upstream 16824 true scaffold_4: 2680871-2697694 Setaria italica
Seita.4G040100 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 2687695-2697694 Setaria italica
Seita.4G040100 10.0kb downstream 10.0kb downstream 16824 true scaffold_4: 2670871-2687694 Setaria italica
Seita.4G040100 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 2670871-2680870 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191026 5267 Panicoideae View MSA
124574445 5269 Grass View MSA
122042731 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.238       High
cufflinks 9.695        
cufflinks 1.866       Low
cufflinks 3.07        
cufflinks 1.992       Low
cufflinks 9.074        
cufflinks 3.783        
cufflinks 1.874       Low
cufflinks 3.535        
cufflinks 7.172        
cufflinks 10.766        
cufflinks 7.491        
cufflinks 6.169        
cufflinks 5.431        
cufflinks 14.121     High High
cufflinks 3.667        
cufflinks 9.637        
cufflinks 10.839        
cufflinks 2.642       Low
cufflinks 11.435       High

0 Strain