Gene : Seita.4G042600 S. italica v2.2
Defline:  (1 of 14) PTHR23073 - 26S PROTEASE REGULATORY SUBUNIT Genomic Order:  426
Name:  ? Seita.4G042600 Secondary Identifier:  ? PAC:32706314
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G042600 0.5kb upstream 0.5kb upstream 3601 true scaffold_4: 3131726-3135326 Setaria italica
Seita.4G042600 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 3134827-3135326 Setaria italica
Seita.4G042600 0.5kb downstream 0.5kb downstream 3601 true scaffold_4: 3131226-3134826 Setaria italica
Seita.4G042600 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 3131226-3131725 Setaria italica
Seita.4G042600 1.0kb upstream 1.0kb upstream 4101 true scaffold_4: 3131726-3135826 Setaria italica
Seita.4G042600 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 3134827-3135826 Setaria italica
Seita.4G042600 1.0kb downstream 1.0kb downstream 4101 true scaffold_4: 3130726-3134826 Setaria italica
Seita.4G042600 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 3130726-3131725 Setaria italica
Seita.4G042600 2.0kb upstream 2.0kb upstream 5101 true scaffold_4: 3131726-3136826 Setaria italica
Seita.4G042600 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 3134827-3136826 Setaria italica
Seita.4G042600 2.0kb downstream 2.0kb downstream 5101 true scaffold_4: 3129726-3134826 Setaria italica
Seita.4G042600 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 3129726-3131725 Setaria italica
Seita.4G042600 5.0kb upstream 5.0kb upstream 8101 true scaffold_4: 3131726-3139826 Setaria italica
Seita.4G042600 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 3134827-3139826 Setaria italica
Seita.4G042600 5.0kb downstream 5.0kb downstream 8101 true scaffold_4: 3126726-3134826 Setaria italica
Seita.4G042600 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 3126726-3131725 Setaria italica
Seita.4G042600 10.0kb upstream 10.0kb upstream 13101 true scaffold_4: 3131726-3144826 Setaria italica
Seita.4G042600 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 3134827-3144826 Setaria italica
Seita.4G042600 10.0kb downstream 10.0kb downstream 13101 true scaffold_4: 3121726-3134826 Setaria italica
Seita.4G042600 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 3121726-3131725 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122116366 5267 Panicoideae View MSA
124410955 5269 Grass View MSA
122047363 5273 Angiosperm View MSA
121351004 5274 Embryophyte View MSA
123424117 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.473     High  
cufflinks 53.937     High High
cufflinks 34.252     High  
cufflinks 32.356     High  
cufflinks 31.24     High  
cufflinks 56.617     High High
cufflinks 37.195     High  
cufflinks 32.62     High  
cufflinks 38.585     High  
cufflinks 31.708     High  
cufflinks 43.737     High  
cufflinks 47.742     High  
cufflinks 57.8     High High
cufflinks 31.993     High  
cufflinks 60.4     High High
cufflinks 20.48     High Low
cufflinks 53.703     High High
cufflinks 27.679     High Low
cufflinks 36.184     High  
cufflinks 61.932     High High

0 Strain