Gene : Seita.4G053900 S. italica v2.2
Defline:  (1 of 11) PTHR16007 - EPIDIDYMAL MEMBRANE PROTEIN E9-RELATED Genomic Order:  539
Name:  ? Seita.4G053900 Secondary Identifier:  ? PAC:32708475
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G053900 0.5kb upstream 0.5kb upstream 2659 true scaffold_4: 4019978-4022636 Setaria italica
Seita.4G053900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 4022137-4022636 Setaria italica
Seita.4G053900 0.5kb downstream 0.5kb downstream 2659 true scaffold_4: 4019478-4022136 Setaria italica
Seita.4G053900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 4019478-4019977 Setaria italica
Seita.4G053900 1.0kb upstream 1.0kb upstream 3159 true scaffold_4: 4019978-4023136 Setaria italica
Seita.4G053900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 4022137-4023136 Setaria italica
Seita.4G053900 1.0kb downstream 1.0kb downstream 3159 true scaffold_4: 4018978-4022136 Setaria italica
Seita.4G053900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 4018978-4019977 Setaria italica
Seita.4G053900 2.0kb upstream 2.0kb upstream 4159 true scaffold_4: 4019978-4024136 Setaria italica
Seita.4G053900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 4022137-4024136 Setaria italica
Seita.4G053900 2.0kb downstream 2.0kb downstream 4159 true scaffold_4: 4017978-4022136 Setaria italica
Seita.4G053900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 4017978-4019977 Setaria italica
Seita.4G053900 5.0kb upstream 5.0kb upstream 7159 true scaffold_4: 4019978-4027136 Setaria italica
Seita.4G053900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 4022137-4027136 Setaria italica
Seita.4G053900 5.0kb downstream 5.0kb downstream 7159 true scaffold_4: 4014978-4022136 Setaria italica
Seita.4G053900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 4014978-4019977 Setaria italica
Seita.4G053900 10.0kb upstream 10.0kb upstream 12159 true scaffold_4: 4019978-4032136 Setaria italica
Seita.4G053900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 4022137-4032136 Setaria italica
Seita.4G053900 10.0kb downstream 10.0kb downstream 12159 true scaffold_4: 4009978-4022136 Setaria italica
Seita.4G053900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 4009978-4019977 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184131 5267 Panicoideae View MSA
124590856 5269 Grass View MSA
122047488 5273 Angiosperm View MSA
121350277 5274 Embryophyte View MSA
123426219 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.489        
cufflinks 6.164       High
cufflinks 0.017     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.096       Low
cufflinks 7.254       High
cufflinks 1.727        
cufflinks 1.845        
cufflinks 1.466        
cufflinks 3.068        
cufflinks 1.583        
cufflinks 1.091        
cufflinks 3.925        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.594        
cufflinks 0.231        
cufflinks 1.492        
cufflinks 0.09     Low Low
cufflinks 0.013     Low Low
cufflinks 2.903        

0 Strain