Gene : Seita.4G053400 S. italica v2.2
Defline:  (1 of 49) PF03140 - Plant protein of unknown function (DUF247) Genomic Order:  534
Name:  ? Seita.4G053400 Secondary Identifier:  ? PAC:32707409
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G053400 0.5kb upstream 0.5kb upstream 2763 true scaffold_4: 3980685-3983447 Setaria italica
Seita.4G053400 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 3980685-3981184 Setaria italica
Seita.4G053400 0.5kb downstream 0.5kb downstream 2763 true scaffold_4: 3981185-3983947 Setaria italica
Seita.4G053400 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 3983448-3983947 Setaria italica
Seita.4G053400 1.0kb upstream 1.0kb upstream 3263 true scaffold_4: 3980185-3983447 Setaria italica
Seita.4G053400 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 3980185-3981184 Setaria italica
Seita.4G053400 1.0kb downstream 1.0kb downstream 3263 true scaffold_4: 3981185-3984447 Setaria italica
Seita.4G053400 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 3983448-3984447 Setaria italica
Seita.4G053400 2.0kb upstream 2.0kb upstream 4263 true scaffold_4: 3979185-3983447 Setaria italica
Seita.4G053400 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 3979185-3981184 Setaria italica
Seita.4G053400 2.0kb downstream 2.0kb downstream 4263 true scaffold_4: 3981185-3985447 Setaria italica
Seita.4G053400 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 3983448-3985447 Setaria italica
Seita.4G053400 5.0kb upstream 5.0kb upstream 7263 true scaffold_4: 3976185-3983447 Setaria italica
Seita.4G053400 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 3976185-3981184 Setaria italica
Seita.4G053400 5.0kb downstream 5.0kb downstream 7263 true scaffold_4: 3981185-3988447 Setaria italica
Seita.4G053400 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 3983448-3988447 Setaria italica
Seita.4G053400 10.0kb upstream 10.0kb upstream 12263 true scaffold_4: 3971185-3983447 Setaria italica
Seita.4G053400 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 3971185-3981184 Setaria italica
Seita.4G053400 10.0kb downstream 10.0kb downstream 12263 true scaffold_4: 3981185-3993447 Setaria italica
Seita.4G053400 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 3983448-3993447 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199929 5267 Panicoideae View MSA
124575617 5269 Grass View MSA
122047273 5273 Angiosperm View MSA
121351531 5274 Embryophyte View MSA
123382209 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.423        
cufflinks 0.241        
cufflinks 0.616        
cufflinks 0.289        
cufflinks 0.387        
cufflinks 0.405        
cufflinks 1.288        
cufflinks 0.527        
cufflinks 0.29        
cufflinks 11.486       High
cufflinks 7.177       High
cufflinks 0.111     Low Low
cufflinks 1.525        
cufflinks 1.404        
cufflinks 2.685       High
cufflinks 0.814        
cufflinks 0.368        
cufflinks 0.143       Low
cufflinks 0.473        
cufflinks 1.95        

0 Strain